A starting point	a.starting.point
addqtl	qtl-internal
adjust.rf.ri	qtl-internal
argmax.geno	argmax.geno
badorder	badorder
bristle3	bristle3
bristleX	bristleX
c.cross	c.cross
calc.errorlod	calc.errorlod
calc.genoprob	calc.genoprob
calc.pairprob	qtl-internal
checkcovar	qtl-internal
checkrf	qtl-internal
clean	clean
comparecrosses	comparecrosses
convert.cross	qtl-internal
convert.scanone	convert.scanone
convert2ss	convert2ss
create.map	qtl-internal
discan	qtl-internal
drop.markers	drop.markers
drop.nullmarkers	drop.nullmarkers
dropqtl	qtl-internal
effectplot	effectplot
effectscan	effectscan
est.map	est.map
est.rf	est.rf
fake.4way	fake.4way
fake.bc	fake.bc
fake.f2	fake.f2
fill.geno	fill.geno
find.flanking	find.flanking
find.marker	find.marker
find.pheno	find.pheno
fitqtl	fitqtl
fixX4write	qtl-internal
fixXgeno.bc	qtl-internal
fixXgeno.f2	qtl-internal
geno.table	geno.table
getgenonames	qtl-internal
getsex	qtl-internal
hyper	hyper
imf.cf	qtl-internal
imf.h	qtl-internal
imf.k	qtl-internal
imf.m	qtl-internal
listeria	listeria
locatemarker	qtl-internal
lodint	lodint
makeqtl	makeqtl
makeSSmap	qtl-internal
map10	map10
max.scanone	max.scanone
max.scantwo	max.scantwo
mf.cf	qtl-internal
mf.h	qtl-internal
mf.k	qtl-internal
mf.m	qtl-internal
movemarker	movemarker
nchr	summary.cross
nind	summary.cross
nmar	summary.cross
nmissing	nmissing
nphe	summary.cross
parseformula	qtl-internal
plot.cross	plot.cross
plot.errorlod	plot.errorlod
plot.geno	plot.geno
plot.info	plot.info
plot.map	plot.map
plot.missing	plot.missing
plot.pxg	plot.pxg
plot.rf	plot.rf
plot.scanone	plot.scanone
plot.scantwo	plot.scantwo
print.cross	print.cross
print.summary.cross	qtl-internal
print.summary.fitqtl	qtl-internal
print.summary.map	qtl-internal
print.summary.ripple	qtl-internal
print.summary.scanone	qtl-internal
print.summary.scantwo	qtl-internal
pull.geno	pull.geno
pull.map	pull.map
read.cro.qtlcart	qtl-internal
read.cross	read.cross
read.cross.csv	qtl-internal
read.cross.gary	qtl-internal
read.cross.karl	qtl-internal
read.cross.mm	qtl-internal
read.cross.qtlcart	qtl-internal
read.cross.qtx	qtl-internal
read.map.qtlcart	qtl-internal
read.maps.mm	qtl-internal
replace.map	replace.map
replaceqtl	qtl-internal
reviseXdata	qtl-internal
ripple	ripple
ripple.perm.sub	qtl-internal
ripple.perm1	qtl-internal
ripple.perm2	qtl-internal
scanone	scanone
scanone.perm	qtl-internal
scanoneXnull	qtl-internal
scanqtl	scanqtl
scantwo	scantwo
scantwo.perm	qtl-internal
sim.cross	sim.cross
sim.cross.4way	qtl-internal
sim.cross.bc	qtl-internal
sim.cross.f2	qtl-internal
sim.geno	sim.geno
sim.map	sim.map
subset.cross	subset.cross
subset.scantwo	qtl-internal
summary.cross	summary.cross
summary.fitqtl	summary.fitqtl
summary.map	summary.map
summary.ripple	summary.ripple
summary.scanone	summary.scanone
summary.scantwo	summary.scantwo
switch.order	switch.order
top.errorlod	top.errorlod
totmar	summary.cross
vbscan	qtl-internal
write.cross	write.cross
write.cross.csv	qtl-internal
write.cross.gary	qtl-internal
write.cross.mm	qtl-internal
write.cross.qtlcart	qtl-internal
