* Installing *source* package 'bim' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c INITVALS.c -o INITVALS.o In file included from INITVALS.c:13: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from INITVALS.c:13: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c QTL_MOVE.c -o QTL_MOVE.o In file included from QTL_MOVE.c:14: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from QTL_MOVE.c:14: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c R_mcmc.c -o R_mcmc.o In file included from R_mcmc.c:12: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from R_mcmc.c:12: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c Utilities.c -o Utilities.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c accept_birth.c -o accept_birth.o In file included from accept_birth.c:13: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from accept_birth.c:13: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c birth.c -o birth.o In file included from birth.c:13: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from birth.c:13: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c com.c -o com.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c death.c -o death.o In file included from death.c:13: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from death.c:13: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c mcmc.c -o mcmc.o In file included from mcmc.c:17: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from mcmc.c:17: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c ranlib.c -o ranlib.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c read_data.c -o read_data.o In file included from read_data.c:17: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from read_data.c:17: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c update_parms.c -o update_parms.o In file included from update_parms.c:12: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from update_parms.c:12: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c update_qtl.c -o update_qtl.o In file included from update_qtl.c:20: revjump.h:111:1: warning: "INFINITY" redefined In file included from /usr/include/math.h:26, from revjump.h:22, from update_qtl.c:20: /usr/include/architecture/ppc/math.h:47:1: warning: this is the location of the previous definition gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o bim.so INITVALS.o QTL_MOVE.o R_mcmc.o Utilities.o accept_birth.o birth.o com.o death.o mcmc.o ranlib.o read_data.o update_parms.o update_qtl.o -lcc_dynamic -framework R ld: warning multiple definitions of symbol _xerbla_ /Library/Frameworks/R.framework/R(print.lo) definition of _xerbla_ /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib(single module) definition of _xerbla_ ** R ** data ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'bim' Formats: text html latex example Bnapus text html latex example bim-internal text html latex bim.effects text html latex example bim.fdr text html latex example bim.model text html latex example bim.qtl text html latex example bmapqtl.options text html latex example fisch text html latex example plot.bim text html latex example plot.bim.diag text html latex example plot.bim.loci text html latex example plot.bim.mcmc text html latex example plot.bim.model text html latex example read.bim text html latex example read.bmapqtl text html latex example run.bmapqtl text html latex example subset.bim text html latex example summary.bim text html latex example vern text html latex example ** building package indices ... * DONE (bim)