R : Copyright 2005, The R Foundation for Statistical Computing
Version 2.1.1  (2005-06-20), ISBN 3-900051-07-0

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> ### * <HEADER>
> ###
> attach(NULL, name = "CheckExEnv")
> assign(".CheckExEnv", as.environment(2), pos = length(search())) # base
> ## add some hooks to label plot pages for base and grid graphics
> setHook("plot.new", ".newplot.hook")
> setHook("persp", ".newplot.hook")
> setHook("grid.newpage", ".gridplot.hook")
> 
> assign("cleanEx",
+        function(env = .GlobalEnv) {
+ 	   rm(list = ls(envir = env, all.names = TRUE), envir = env)
+            RNGkind("default", "default")
+ 	   set.seed(1)
+    	   options(warn = 1)
+ 	   delayedAssign("T", stop("T used instead of TRUE"),
+ 		  assign.env = .CheckExEnv)
+ 	   delayedAssign("F", stop("F used instead of FALSE"),
+ 		  assign.env = .CheckExEnv)
+ 	   sch <- search()
+ 	   newitems <- sch[! sch %in% .oldSearch]
+ 	   for(item in rev(newitems))
+                eval(substitute(detach(item), list(item=item)))
+ 	   missitems <- .oldSearch[! .oldSearch %in% sch]
+ 	   if(length(missitems))
+ 	       warning("items ", paste(missitems, collapse=", "),
+ 		       " have been removed from the search path")
+        },
+        env = .CheckExEnv)
> assign("..nameEx", "__{must remake R-ex/*.R}__", env = .CheckExEnv) # for now
> assign("ptime", proc.time(), env = .CheckExEnv)
> grDevices::postscript("maptree-Examples.ps")
> assign("par.postscript", graphics::par(no.readonly = TRUE), env = .CheckExEnv)
> options(contrasts = c(unordered = "contr.treatment", ordered = "contr.poly"))
> options(warn = 1)    
> library('maptree')
Loading required package: mva
Warning: package 'mva' has been merged into 'stats'
Loading required package: cluster
Loading required package: rpart
Loading required package: combinat
> 
> assign(".oldSearch", search(), env = .CheckExEnv)
> assign(".oldNS", loadedNamespaces(), env = .CheckExEnv)
> cleanEx(); ..nameEx <- "draw.clust"
> 
> ### * draw.clust
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: draw.clust
> ### Title: Graph a Hierarchical Cluster Tree
> ### Aliases: draw.clust
> ### Keywords: hplot cluster
> 
> ### ** Examples
> 
>   library (cluster)
>   data (oregon.bird.dist)
> 
>   draw.clust (prune.clust (agnes (oregon.bird.dist), k=6))
Warning in if (class(cluster) == "hclust") clust <- cluster else if (inherits(cluster,  : 
	 the condition has length > 1 and only the first element will be used
> 
> 
> 
> cleanEx(); ..nameEx <- "draw.tree"
> 
> ### * draw.tree
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: draw.tree
> ### Title: Graph a Classification or Regression Tree
> ### Aliases: draw.tree
> ### Keywords: hplot tree
> 
> ### ** Examples
> 
>   library (rpart)
>   data (oregon.env.vars)
> 
>   draw.tree (prune.Rpart (rpart (oregon.env.vars), best=7), 
+       nodeinfo=TRUE, units="species", cases="cells", digits=0)
> 
> 
> 
> cleanEx(); ..nameEx <- "group.clust"
> 
> ### * group.clust
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: group.clust
> ### Title: Observation Groups for a Hierarchical Cluster Tree
> ### Aliases: group.clust
> ### Keywords: manip cluster
> 
> ### ** Examples
> 
>   library (mva)
Warning: package 'mva' has been merged into 'stats'
>   data (oregon.bird.dist, oregon.grid)
> 
>   group <- group.clust (hclust (dist (oregon.bird.dist)), k=6)
>   names(group) <- row.names(oregon.bird.dist)
>   map.groups (oregon.grid, group)
> 
> 
> 
> cleanEx(); ..nameEx <- "group.tree"
> 
> ### * group.tree
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: group.tree
> ### Title: Observation Groups for Classification or Regression Tree
> ### Aliases: group.tree
> ### Keywords: manip tree
> 
> ### ** Examples
> 
>   library (rpart)
>   data (oregon.env.vars, oregon.grid)
> 
>   group <- group.tree (prune.Rpart (rpart (oregon.env.vars), best=7))
>   names(group) <- row.names(oregon.env.vars)
>   map.groups (oregon.grid, group=group)
> 
> 
> 
> cleanEx(); ..nameEx <- "kgs"
> 
> ### * kgs
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: kgs
> ### Title: KGS Measure for Pruning Hierarchical Clusters
> ### Aliases: kgs
> ### Keywords: manip cluster
> 
> ### ** Examples
> 
>   library (cluster)
>   library (combinat)
>   data (votes.repub)
> 
>   a <- agnes (votes.repub, method="ward")
>   b <- kgs (a, a$diss, maxclust=20)
Warning in if (class(cluster) == "hclust") clust <- cluster else if (inherits(cluster,  : 
	 the condition has length > 1 and only the first element will be used
>   plot (names (b), b, xlab="# clusters", ylab="penalty")
> 
> 
> 
> cleanEx(); ..nameEx <- "map.groups"
> 
> ### * map.groups
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: map.groups
> ### Title: Map Groups of Observations
> ### Aliases: map.groups
> ### Keywords: hplot cluster tree
> 
> ### ** Examples
> 
>   data (oregon.bird.names, oregon.env.vars, oregon.bird.dist)
>   data (oregon.border, oregon.grid)
> 
>   # range map for American Avocet
>   spp <- match ("American avocet", oregon.bird.names[["common.name"]])
>   group <- oregon.bird.dist[,spp] + 1
>   names(group) <- row.names(oregon.bird.dist)
>   map.groups (oregon.grid, group=group, col="gray")
>   lines (oregon.border)
> 
>   # distribution of January temperatures
>   cuts <- quantile (oregon.env.vars[["jan.temp"]], probs=seq(0,1,1/5))
>   group <- cut (oregon.env.vars[["jan.temp"]], cuts, labels=FALSE, 
+     include.lowest=TRUE)
>   names(group) <- row.names(oregon.env.vars)
>   map.groups (oregon.grid, group=group, col="gray")
>   lines (oregon.border)
> 
>   # January temperatures using point symbols rather than polygons
>   map.groups (oregon.env.vars, group, pch=19, col="gray")
>   lines (oregon.border)
> 
> 
> 
> cleanEx(); ..nameEx <- "map.key"
> 
> ### * map.key
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: map.key
> ### Title: Draw Key to accompany Map of Groups
> ### Aliases: map.key
> ### Keywords: hplot aplot
> 
> ### ** Examples
> 
>   data (oregon.env.vars)
> 
>   # key for examples in help(map.groups)
>   # range map for American Avocet
>   map.key (0.2, 0.2, labels=c("absent","present"), pch=106, 
+     col="gray", head="key", new=TRUE)
>   # distribution of January temperatures
>   cuts <- quantile (oregon.env.vars[["jan.temp"]], probs=seq(0,1,1/5))
>   map.key (0.2, 0.2, labels=as.character(round(cuts,0)), 
+     col="gray", sep=0, head="key", new=TRUE)
> 
>   # key for example in this-is-escaped-codenormal-bracket62bracket-normal
>   map.key (0.2, 0.2, labels=as.character(seq(6)), 
+     pch=19, head="node", new=TRUE)
> 
> 
> 
> cleanEx(); ..nameEx <- "ngon"
> 
> ### * ngon
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: ngon
> ### Title: Outline or Fill a Regular Polygon
> ### Aliases: ngon
> ### Keywords: aplot
> 
> ### ** Examples
> 
>   plot (c(0,1), c(0,1), type="n")
>   ngon (c(.5, .5, 10, "blue"), angle=30, n=3)
>   apply (cbind (runif(8), runif(8), 6, 2), 1, ngon)
NULL
> 
> 
> 
> cleanEx(); ..nameEx <- "prune.Rpart"
> 
> ### * prune.Rpart
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: prune.Rpart
> ### Title: Prunes an Rpart Classification or Regression Tree
> ### Aliases: prune.Rpart
> ### Keywords: manip cluster
> 
> ### ** Examples
> 
>   library (rpart)
>   data (oregon.env.vars, oregon.border, oregon.grid)
> 
>   draw.tree (prune.Rpart (rpart (oregon.env.vars), best=7), 
+     nodeinfo=TRUE, units="species", cases="cells", digits=0)
> 
>   group <- group.tree (prune.Rpart (rpart (oregon.env.vars), best=7))
>   names(group) <- row.names(oregon.env.vars)
>   map.groups (oregon.grid, group)
>   lines (oregon.border)
>   map.key (0.05, 0.65, labels=as.character(seq(6)), 
+     size=1, new=FALSE, sep=0.5, pch=19, head="node")
> 
> 
> 
> cleanEx(); ..nameEx <- "prune.clust"
> 
> ### * prune.clust
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: prune.clust
> ### Title: Prunes a Hierarchical Cluster Tree
> ### Aliases: prune.clust
> ### Keywords: manip cluster
> 
> ### ** Examples
> 
>   library (cluster)
>   data (oregon.bird.dist)
> 
>   draw.clust (prune.clust (agnes (oregon.bird.dist), k=6))
Warning in if (class(cluster) == "hclust") clust <- cluster else if (inherits(cluster,  : 
	 the condition has length > 1 and only the first element will be used
> 
> 
> 
> ### * <FOOTER>
> ###
> cat("Time elapsed: ", proc.time() - get("ptime", env = .CheckExEnv),"\n")
Time elapsed:  4.56 0.17 4.75 0 0 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')