R : Copyright 2005, The R Foundation for Statistical Computing
Version 2.1.1  (2005-06-20), ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.

> ### * <HEADER>
> ###
> attach(NULL, name = "CheckExEnv")
> assign(".CheckExEnv", as.environment(2), pos = length(search())) # base
> ## add some hooks to label plot pages for base and grid graphics
> setHook("plot.new", ".newplot.hook")
> setHook("persp", ".newplot.hook")
> setHook("grid.newpage", ".gridplot.hook")
> 
> assign("cleanEx",
+        function(env = .GlobalEnv) {
+ 	   rm(list = ls(envir = env, all.names = TRUE), envir = env)
+            RNGkind("default", "default")
+ 	   set.seed(1)
+    	   options(warn = 1)
+ 	   delayedAssign("T", stop("T used instead of TRUE"),
+ 		  assign.env = .CheckExEnv)
+ 	   delayedAssign("F", stop("F used instead of FALSE"),
+ 		  assign.env = .CheckExEnv)
+ 	   sch <- search()
+ 	   newitems <- sch[! sch %in% .oldSearch]
+ 	   for(item in rev(newitems))
+                eval(substitute(detach(item), list(item=item)))
+ 	   missitems <- .oldSearch[! .oldSearch %in% sch]
+ 	   if(length(missitems))
+ 	       warning("items ", paste(missitems, collapse=", "),
+ 		       " have been removed from the search path")
+        },
+        env = .CheckExEnv)
> assign("..nameEx", "__{must remake R-ex/*.R}__", env = .CheckExEnv) # for now
> assign("ptime", proc.time(), env = .CheckExEnv)
> grDevices::postscript("mlica-Examples.ps")
> assign("par.postscript", graphics::par(no.readonly = TRUE), env = .CheckExEnv)
> options(contrasts = c(unordered = "contr.treatment", ordered = "contr.poly"))
> options(warn = 1)    
> library('mlica')
> 
> assign(".oldSearch", search(), env = .CheckExEnv)
> assign(".oldNS", loadedNamespaces(), env = .CheckExEnv)
> cleanEx(); ..nameEx <- "CheckStability"
> 
> ### * CheckStability
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: CheckStability
> ### Title: Tests stability of inferred ICA modes.
> ### Aliases: CheckStability
> ### Keywords: cluster
> 
> ### ** Examples
> 
> 
> 
> 
> cleanEx(); ..nameEx <- "PriorNormPCA"
> 
> ### * PriorNormPCA
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: PriorNormPCA
> ### Title: Prior PCA analysis for threshold setting and noise removal
> ### Aliases: PriorNormPCA
> ### Keywords: cluster
> 
> ### ** Examples
> 
> 
> 
> 
> cleanEx(); ..nameEx <- "SortModes"
> 
> ### * SortModes
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: SortModes
> ### Title: Sorting of ICA modes
> ### Aliases: SortModes
> ### Keywords: cluster
> 
> ### ** Examples
> 
> 
> 
> 
> cleanEx(); ..nameEx <- "mlica"
> 
> ### * mlica
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: mlica
> ### Title: Maximum likelihood implementation of Independent Component
> ###   Analysis
> ### Aliases: mlica
> ### Keywords: cluster
> 
> ### ** Examples
> 
> data(simMAdata);
> dataX <- simMAdata[[1]];
> prPCA <- PriorNormPCA(dataX);
[1] "Computing correlation matrix"
[1] "Finished computing correlation matrix"
[1] "About to enter PCA"
> prNCP <- proposeNCP(prPCA,0.1);
[1] "About to find ncp"
> a.best.l <- list();
> for( i in 1:5){
+  a.best.l[[i]] <- mlica(prNCP,nruns=5);
+ }
[1] "Entering mlica"
[1] "Performing preliminary run"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.367395134232487"
[1] "iterated logL"
[1] -3772.098
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0862028347184921"
[1] "iterated logL"
[1] -3599.166
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0610276930959863"
[1] "iterated logL"
[1] -3542.697
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0417624403676474"
[1] "iterated logL"
[1] -3471.729
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0318322390962345"
[1] "iterated logL"
[1] -3414.168
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0148156327755037"
[1] "iterated logL"
[1] -3397.376
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00358439539782146"
[1] "iterated logL"
[1] -3395.664
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000721831279461403"
[1] "iterated logL"
[1] -3395.561
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000129777706846185"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "2.39537686154977e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Finished preliminary run"
[1] "Starting runs"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.375457609229598"
[1] "iterated logL"
[1] -4468.27
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0876018591513438"
[1] "iterated logL"
[1] -4053.273
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.101058206538718"
[1] "iterated logL"
[1] -3722.185
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="            "0.093121825935297"
[1] "iterated logL"
[1] -3455.877
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0370463324214211"
[1] "iterated logL"
[1] -3409.688
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0195913135347199"
[1] "iterated logL"
[1] -3398.432
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00752624922454357"
[1] "iterated logL"
[1] -3396.027
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00186699159427396"
[1] "iterated logL"
[1] -3395.657
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000428335676915232"
[1] "iterated logL"
[1] -3395.576
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000101852734574193"
[1] "iterated logL"
[1] -3395.557
[1] "Entering iteration loop " "10"                      
[1] "Checkpt1"
[1] "AvDev="               "2.40977675241372e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "11"                      
[1] "Checkpt1"
[1] "AvDev="               "5.80183827278643e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.315719460183593"
[1] "iterated logL"
[1] -3816.621
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0982188570722875"
[1] "iterated logL"
[1] -3599.812
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0722462675272631"
[1] "iterated logL"
[1] -3432.63
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0185822267584298"
[1] "iterated logL"
[1] -3397.878
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00251143762382507"
[1] "iterated logL"
[1] -3395.580
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000477190067515824"
[1] "iterated logL"
[1] -3395.59
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000106452882892075"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "2.28522236935071e-05"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "5.41098939972492e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.358628137406977"
[1] "iterated logL"
[1] -3828.14
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.129770944434534"
[1] "iterated logL"
[1] -3545.533
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.100905249734176"
[1] "iterated logL"
[1] -3423.081
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0280819672812188"
[1] "iterated logL"
[1] -3397.326
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00286295621993917"
[1] "iterated logL"
[1] -3395.617
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000321880068692939"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "4.65542265052205e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "8.11914474936465e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.335896671015984"
[1] "iterated logL"
[1] -3986.125
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.133815961815697"
[1] "iterated logL"
[1] -3546.77
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.073180065144412"
[1] "iterated logL"
[1] -3410.738
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0145884767289263"
[1] "iterated logL"
[1] -3396.265
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00234063879376196"
[1] "iterated logL"
[1] -3395.682
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000532089525933663"
[1] "iterated logL"
[1] -3395.579
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000123113428843511"
[1] "iterated logL"
[1] -3395.558
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "2.85592250575254e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="              "6.6692918183351e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.328314901474734"
[1] "iterated logL"
[1] -4089.012
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.138336089129245"
[1] "iterated logL"
[1] -3529.938
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0593952221748888"
[1] "iterated logL"
[1] -3420.978
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0147308556437102"
[1] "iterated logL"
[1] -3397.299
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00318570856430627"
[1] "iterated logL"
[1] -3395.753
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000685424019903627"
[1] "iterated logL"
[1] -3395.573
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000154840414228707"
[1] "iterated logL"
[1] -3395.558
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "3.40965320854243e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "7.67063090485322e-06"
[1] "iterated logL"
[1] -3395.552
[1] "End of runs"
[1] "Entering mlica"
[1] "Performing preliminary run"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.329288019026489"
[1] "iterated logL"
[1] -3885.902
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.137580261647085"
[1] "iterated logL"
[1] -3571.327
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.097024883545125"
[1] "iterated logL"
[1] -3433.484
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0327818832072949"
[1] "iterated logL"
[1] -3399.136
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00620134845316004"
[1] "iterated logL"
[1] -3395.473
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00137664122550565"
[1] "iterated logL"
[1] -3395.509
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000312175496116739"
[1] "iterated logL"
[1] -3395.538
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "7.07393548264786e-05"
[1] "iterated logL"
[1] -3395.549
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "1.61919741169866e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Finished preliminary run"
[1] "Starting runs"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.385159309520115"
[1] "iterated logL"
[1] -4234.818
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.083179008015318"
[1] "iterated logL"
[1] -4012.716
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.124498925203534"
[1] "iterated logL"
[1] -3604.374
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0812366244305826"
[1] "iterated logL"
[1] -3425.803
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0213662167869219"
[1] "iterated logL"
[1] -3397.312
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00454396738995363"
[1] "iterated logL"
[1] -3395.848
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00102647484551017"
[1] "iterated logL"
[1] -3395.594
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000233181035732087"
[1] "iterated logL"
[1] -3395.564
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "5.32172023059518e-05"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "1.21745531947732e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.359756389935321"
[1] "iterated logL"
[1] -3712.301
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0893471053083882"
[1] "iterated logL"
[1] -3472.025
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0223620422478441"
[1] "iterated logL"
[1] -3467.098
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00885773413861326"
[1] "iterated logL"
[1] -3464.302
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00789852345309362"
[1] "iterated logL"
[1] -3459.873
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0136983499787841"
[1] "iterated logL"
[1] -3450.694
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0248338290065341"
[1] "iterated logL"
[1] -3435.935
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0316852203227875"
[1] "iterated logL"
[1] -3424.539
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0166096472134974"
[1] "iterated logL"
[1] -3401.294
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00505563938663231"
[1] "iterated logL"
[1] -3395.736
[1] "Entering iteration loop " "10"                      
[1] "Checkpt1"
[1] "AvDev="             "0.0010518476321245"
[1] "iterated logL"
[1] -3395.544
[1] "Entering iteration loop " "11"                      
[1] "Checkpt1"
[1] "AvDev="               "0.000237621888045679"
[1] "iterated logL"
[1] -3395.548
[1] "Entering iteration loop " "12"                      
[1] "Checkpt1"
[1] "AvDev="               "5.33498075371313e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Entering iteration loop " "13"                      
[1] "Checkpt1"
[1] "AvDev="               "1.20267204633863e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.291651322222362"
[1] "iterated logL"
[1] -3861.233
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.107810798277330"
[1] "iterated logL"
[1] -3555.424
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0665979475668632"
[1] "iterated logL"
[1] -3435.505
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0429325010177824"
[1] "iterated logL"
[1] -3398.439
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0091789755893493"
[1] "iterated logL"
[1] -3395.325
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00139740225879201"
[1] "iterated logL"
[1] -3395.464
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000341128174882133"
[1] "iterated logL"
[1] -3395.537
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "7.82527685986633e-05"
[1] "iterated logL"
[1] -3395.547
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "1.90925988853480e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "4.49390946955522e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.261134960205717"
[1] "iterated logL"
[1] -3940.183
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.108276685255867"
[1] "iterated logL"
[1] -3669.515
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0822663174843333"
[1] "iterated logL"
[1] -3514.372
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0580245585756067"
[1] "iterated logL"
[1] -3406.286
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="            "0.018509714299079"
[1] "iterated logL"
[1] -3395.773
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00510840770680201"
[1] "iterated logL"
[1] -3395.309
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00136610928743339"
[1] "iterated logL"
[1] -3395.48
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000333680049681205"
[1] "iterated logL"
[1] -3395.533
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "8.01871213362025e-05"
[1] "iterated logL"
[1] -3395.548
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "1.92549477094689e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Entering iteration loop " "10"                      
[1] "Checkpt1"
[1] "AvDev="              "4.6145202901092e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.283333444973491"
[1] "iterated logL"
[1] -3940.44
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.116654832459706"
[1] "iterated logL"
[1] -3519.040
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0620149037743501"
[1] "iterated logL"
[1] -3417.379
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0279145591140008"
[1] "iterated logL"
[1] -3399.002
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00896724025308097"
[1] "iterated logL"
[1] -3396.114
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00218897236186432"
[1] "iterated logL"
[1] -3395.657
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000480712319657541"
[1] "iterated logL"
[1] -3395.579
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000113561925504008"
[1] "iterated logL"
[1] -3395.558
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "2.64152941199878e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "6.32847500005765e-06"
[1] "iterated logL"
[1] -3395.552
[1] "End of runs"
[1] "Entering mlica"
[1] "Performing preliminary run"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.375092190158385"
[1] "iterated logL"
[1] -4381.96
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.147600890862585"
[1] "iterated logL"
[1] -3756.71
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0804762465040857"
[1] "iterated logL"
[1] -3525.080
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0243221941193649"
[1] "iterated logL"
[1] -3485.597
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0243000202118048"
[1] "iterated logL"
[1] -3460.976
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0366683898312436"
[1] "iterated logL"
[1] -3418.486
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0267334621541653"
[1] "iterated logL"
[1] -3400.091
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00750244935706094"
[1] "iterated logL"
[1] -3395.715
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00129888400149749"
[1] "iterated logL"
[1] -3395.525
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000254428064492728"
[1] "iterated logL"
[1] -3395.545
[1] "Finished preliminary run"
[1] "Starting runs"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.309887083928428"
[1] "iterated logL"
[1] -3727.999
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0789077603089541"
[1] "iterated logL"
[1] -3575.976
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0797363737470309"
[1] "iterated logL"
[1] -3448.636
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="            "0.051913057110964"
[1] "iterated logL"
[1] -3408.281
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0141294392420744"
[1] "iterated logL"
[1] -3396.371
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00252262680554048"
[1] "iterated logL"
[1] -3395.639
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00051195008203637"
[1] "iterated logL"
[1] -3395.57
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000115178198022167"
[1] "iterated logL"
[1] -3395.556
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="              "2.6134780356291e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "6.21419194276822e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.324131951812578"
[1] "iterated logL"
[1] -3846.045
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.106277501521161"
[1] "iterated logL"
[1] -3637.543
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.068539859367575"
[1] "iterated logL"
[1] -3585.769
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0518221776372616"
[1] "iterated logL"
[1] -3495.01
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0412339723135077"
[1] "iterated logL"
[1] -3412.211
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0157237420531042"
[1] "iterated logL"
[1] -3396.094
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00308332617620201"
[1] "iterated logL"
[1] -3395.676
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000534025248249521"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "9.75142436699915e-05"
[1] "iterated logL"
[1] -3395.555
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="              "1.8731111206909e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.333868506500713"
[1] "iterated logL"
[1] -3678.546
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.113978807933628"
[1] "iterated logL"
[1] -3585.737
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.070352456344517"
[1] "iterated logL"
[1] -3499.967
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0463148254455034"
[1] "iterated logL"
[1] -3426.151
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0206859903234578"
[1] "iterated logL"
[1] -3398.641
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00475344286422404"
[1] "iterated logL"
[1] -3395.719
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00095876300908996"
[1] "iterated logL"
[1] -3395.562
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000182098966388956"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "3.51201447318632e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "7.40616208620544e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.385480483457307"
[1] "iterated logL"
[1] -3857.574
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0666356777185355"
[1] "iterated logL"
[1] -3766.322
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0558972315222325"
[1] "iterated logL"
[1] -3578.967
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0642305851778809"
[1] "iterated logL"
[1] -3417.228
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0159485740917080"
[1] "iterated logL"
[1] -3395.808
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00221810017197864"
[1] "iterated logL"
[1] -3395.733
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000412789915848984"
[1] "iterated logL"
[1] -3395.556
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "9.54851095648397e-05"
[1] "iterated logL"
[1] -3395.557
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="              "2.0568311970378e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.260528021447839"
[1] "iterated logL"
[1] -4190.486
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="           "0.09276376517659"
[1] "iterated logL"
[1] -3852.799
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="            "0.107516990800982"
[1] "iterated logL"
[1] -3472.363
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="            "0.043538073240351"
[1] "iterated logL"
[1] -3417.474
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0284407978382974"
[1] "iterated logL"
[1] -3401.478
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0142373137817075"
[1] "iterated logL"
[1] -3395.749
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00485165212772803"
[1] "iterated logL"
[1] -3395.329
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00127933974176435"
[1] "iterated logL"
[1] -3395.484
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000313921288927465"
[1] "iterated logL"
[1] -3395.535
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "7.57188527525102e-05"
[1] "iterated logL"
[1] -3395.548
[1] "Entering iteration loop " "10"                      
[1] "Checkpt1"
[1] "AvDev="               "1.81755248824284e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Entering iteration loop " "11"                      
[1] "Checkpt1"
[1] "AvDev="               "4.35342414093168e-06"
[1] "iterated logL"
[1] -3395.552
[1] "End of runs"
[1] "Entering mlica"
[1] "Performing preliminary run"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.370415247451718"
[1] "iterated logL"
[1] -3696.769
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.110123021948471"
[1] "iterated logL"
[1] -3452.239
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0346833268512709"
[1] "iterated logL"
[1] -3397.159
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00493282009946205"
[1] "iterated logL"
[1] -3395.622
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000857419956572159"
[1] "iterated logL"
[1] -3395.589
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000179688230687838"
[1] "iterated logL"
[1] -3395.557
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "4.00154929625471e-05"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "8.89089251228915e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Finished preliminary run"
[1] "Starting runs"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="           "0.35396474198982"
[1] "iterated logL"
[1] -3698.008
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.122171293167710"
[1] "iterated logL"
[1] -3453.401
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0548836342822272"
[1] "iterated logL"
[1] -3413.103
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0104495485602006"
[1] "iterated logL"
[1] -3396.685
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00110766330817651"
[1] "iterated logL"
[1] -3395.572
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000105158672742615"
[1] "iterated logL"
[1] -3395.555
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "2.03465008328953e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.390443594368022"
[1] "iterated logL"
[1] -3872.996
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0813059522544271"
[1] "iterated logL"
[1] -3745.104
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0746726580511757"
[1] "iterated logL"
[1] -3611.011
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="            "0.053268601048938"
[1] "iterated logL"
[1] -3496.013
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0327616681544495"
[1] "iterated logL"
[1] -3437.985
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0316877830223318"
[1] "iterated logL"
[1] -3418.081
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0274417016069113"
[1] "iterated logL"
[1] -3402.138
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0121973289097926"
[1] "iterated logL"
[1] -3396.639
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00385770769268924"
[1] "iterated logL"
[1] -3395.776
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000885079312361515"
[1] "iterated logL"
[1] -3395.6
[1] "Entering iteration loop " "10"                      
[1] "Checkpt1"
[1] "AvDev="               "0.000204215947263137"
[1] "iterated logL"
[1] -3395.564
[1] "Entering iteration loop " "11"                      
[1] "Checkpt1"
[1] "AvDev="               "4.88980604539177e-05"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "12"                      
[1] "Checkpt1"
[1] "AvDev="               "1.15445216026205e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.323382699095188"
[1] "iterated logL"
[1] -3849.87
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0999255317333195"
[1] "iterated logL"
[1] -3578.92
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0694379193176431"
[1] "iterated logL"
[1] -3521.472
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0525820524575651"
[1] "iterated logL"
[1] -3448.825
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0289181905752016"
[1] "iterated logL"
[1] -3400.404
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00629672100473172"
[1] "iterated logL"
[1] -3395.648
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000940614844355555"
[1] "iterated logL"
[1] -3395.579
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000201486310672457"
[1] "iterated logL"
[1] -3395.561
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "4.77635736848398e-05"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "1.12447569016725e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.376571882002056"
[1] "iterated logL"
[1] -3568.189
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0590418264150962"
[1] "iterated logL"
[1] -3444.082
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0216904902548267"
[1] "iterated logL"
[1] -3435.946
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0280943185592131"
[1] "iterated logL"
[1] -3420.443
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0282647458354581"
[1] "iterated logL"
[1] -3403.142
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0158315325160728"
[1] "iterated logL"
[1] -3396.088
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00579811060398748"
[1] "iterated logL"
[1] -3395.302
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00158878626796777"
[1] "iterated logL"
[1] -3395.467
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000390281667349442"
[1] "iterated logL"
[1] -3395.530
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "9.36774951262005e-05"
[1] "iterated logL"
[1] -3395.547
[1] "Entering iteration loop " "10"                      
[1] "Checkpt1"
[1] "AvDev="               "2.25066259751524e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Entering iteration loop " "11"                      
[1] "Checkpt1"
[1] "AvDev="              "5.3895247605831e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.368775821252752"
[1] "iterated logL"
[1] -4049.215
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.153977865430373"
[1] "iterated logL"
[1] -3457.848
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0486472954224826"
[1] "iterated logL"
[1] -3402.280
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00577389760359748"
[1] "iterated logL"
[1] -3395.569
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000469917957321304"
[1] "iterated logL"
[1] -3395.558
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "8.43109692160111e-05"
[1] "iterated logL"
[1] -3395.548
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "1.64812162983884e-05"
[1] "iterated logL"
[1] -3395.552
[1] "End of runs"
[1] "Entering mlica"
[1] "Performing preliminary run"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.357079095404145"
[1] "iterated logL"
[1] -3881.151
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0841972117591725"
[1] "iterated logL"
[1] -3776.137
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0742862389602894"
[1] "iterated logL"
[1] -3663.779
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0555714801252493"
[1] "iterated logL"
[1] -3591.853
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0313387704232094"
[1] "iterated logL"
[1] -3525.64
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="            "0.038082060258765"
[1] "iterated logL"
[1] -3481.848
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0399283388726687"
[1] "iterated logL"
[1] -3418.148
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0169963077644551"
[1] "iterated logL"
[1] -3396.475
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00256149414024702"
[1] "iterated logL"
[1] -3395.580
[1] "Entering iteration loop " "9"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000424907543272756"
[1] "iterated logL"
[1] -3395.570
[1] "Finished preliminary run"
[1] "Starting runs"
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.392525259667574"
[1] "iterated logL"
[1] -4028.963
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.144113466646224"
[1] "iterated logL"
[1] -3631.741
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0979757388988578"
[1] "iterated logL"
[1] -3428.565
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0385210963264321"
[1] "iterated logL"
[1] -3396.677
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00634643528941352"
[1] "iterated logL"
[1] -3395.764
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00115290345329830"
[1] "iterated logL"
[1] -3395.557
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000233197556706047"
[1] "iterated logL"
[1] -3395.556
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="              "5.5043291352894e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "1.20457015168853e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.386023250018084"
[1] "iterated logL"
[1] -3870.121
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0962919509303932"
[1] "iterated logL"
[1] -3532.127
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0582093663780044"
[1] "iterated logL"
[1] -3438.043
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="            "0.037584524868959"
[1] "iterated logL"
[1] -3403.051
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="            "0.011105277406192"
[1] "iterated logL"
[1] -3396.143
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00169426827310418"
[1] "iterated logL"
[1] -3395.536
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000300233055225071"
[1] "iterated logL"
[1] -3395.546
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "5.75435881733779e-05"
[1] "iterated logL"
[1] -3395.55
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "1.17996496289556e-05"
[1] "iterated logL"
[1] -3395.551
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.379168018902488"
[1] "iterated logL"
[1] -3648.212
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.084952689328466"
[1] "iterated logL"
[1] -3565.937
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0528135249200393"
[1] "iterated logL"
[1] -3451.465
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0283784952013814"
[1] "iterated logL"
[1] -3399.15
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="           "0.00746985869233"
[1] "iterated logL"
[1] -3395.902
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00133806842162908"
[1] "iterated logL"
[1] -3395.567
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000238693424840117"
[1] "iterated logL"
[1] -3395.557
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "4.53175032450845e-05"
[1] "iterated logL"
[1] -3395.553
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "8.39065478069247e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.278073859760606"
[1] "iterated logL"
[1] -4268.639
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.149859284382016"
[1] "iterated logL"
[1] -3541.749
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0496528739544092"
[1] "iterated logL"
[1] -3406.597
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00929704337428662"
[1] "iterated logL"
[1] -3396.367
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00182542194311011"
[1] "iterated logL"
[1] -3395.626
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000396849095384102"
[1] "iterated logL"
[1] -3395.567
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "8.83234570980168e-05"
[1] "iterated logL"
[1] -3395.554
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="               "1.96105923018618e-05"
[1] "iterated logL"
[1] -3395.552
[1] "Entering iteration loop " "8"                       
[1] "Checkpt1"
[1] "AvDev="               "4.35015901216522e-06"
[1] "iterated logL"
[1] -3395.552
[1] "Entered MLica"
[1] "Entering iteration loop " "0"                       
[1] "Checkpt1"
[1] "AvDev="            "0.347301622120923"
[1] "iterated logL"
[1] -3960.984
[1] "Entering iteration loop " "1"                       
[1] "Checkpt1"
[1] "AvDev="            "0.141612839685034"
[1] "iterated logL"
[1] -3516.92
[1] "Entering iteration loop " "2"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0719139890125907"
[1] "iterated logL"
[1] -3414.987
[1] "Entering iteration loop " "3"                       
[1] "Checkpt1"
[1] "AvDev="             "0.0220177667477393"
[1] "iterated logL"
[1] -3396.957
[1] "Entering iteration loop " "4"                       
[1] "Checkpt1"
[1] "AvDev="              "0.00365050083507766"
[1] "iterated logL"
[1] -3395.486
[1] "Entering iteration loop " "5"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000623341927584557"
[1] "iterated logL"
[1] -3395.544
[1] "Entering iteration loop " "6"                       
[1] "Checkpt1"
[1] "AvDev="               "0.000108593197276069"
[1] "iterated logL"
[1] -3395.547
[1] "Entering iteration loop " "7"                       
[1] "Checkpt1"
[1] "AvDev="              "1.9087848842153e-05"
[1] "iterated logL"
[1] -3395.551
[1] "End of runs"
> checkICA <- CheckStability(a.best.l,0.7);
> sourceS <- simMAdata[[3]];
> print(cor(a.best.l[[1]]$S,sourceS));
                 1            2             3            4            5
[1,]  7.629073e-05  0.032796109  0.9986608943 -0.054688077  0.045563106
[2,] -1.708595e-02 -0.006946028  0.0419230579  0.996658162  0.020183769
[3,] -9.985558e-01  0.065142562  0.0011294712  0.045241728 -0.005084015
[4,]  1.245682e-02 -0.045891676  0.0302913853 -0.039831971 -0.998277236
[5,] -4.938754e-02 -0.996256277 -0.0001780157 -0.006951395  0.030550464
> sModes <- SortModes(a.best.l[[1]],prNCP,c.val=0.5);
> 
> 
> 
> cleanEx(); ..nameEx <- "mlicaMAIN"
> 
> ### * mlicaMAIN
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: mlicaMAIN
> ### Title: Main engine function that implements the fixed point algorithm
> ###   for maximum likelihood inference of ICA modes.
> ### Aliases: mlicaMAIN
> ### Keywords: internal
> 
> ### ** Examples
> 
> 
> 
> 
> cleanEx(); ..nameEx <- "proposeNCP"
> 
> ### * proposeNCP
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: proposeNCP
> ### Title: Number of independent components proposal function
> ### Aliases: proposeNCP
> ### Keywords: cluster
> 
> ### ** Examples
> 
> 
> 
> 
> ### * <FOOTER>
> ###
> cat("Time elapsed: ", proc.time() - get("ptime", env = .CheckExEnv),"\n")
Time elapsed:  18.62 1.99 20.71 0 0 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')