HMPTrees-package        Statistical Object Oriented Data Analysis of
                        RDP-based Taxonomic trees from Human Microbiome
                        Data: Modeling, Visualization, and Two-Group
                        Comparison
checkTreeValidity       Check Validity of an RDP-Based Taxonomic Tree
compareTwoDataSets      Likelihood-Ratio-Test Statistics to Compare the
                        Distribution of 2 Sets of RDP-Based Taxonomic
                        Trees
createAndPlot           Create and Plot a Tree from a Data Set
createTrees             Create a Tree Object
displayLegend           Displays Tree Plot Legend
formatData              Formats a Data Set
generateTree            Generate Test Trees
getMLEandLoglike        Get MLE and Log Likelihood of a Data Set
mergeDataSets           Merge Multiple Data Sets
plotTree                Plots a Tree Object
plotTreeDataMDS         Plot an MDS Plot of a Group of Trees
saliva                  Saliva Data Set
stool                   Stool Data Set
throat                  Throat Data Set
transformHMPTreetoHMP   Transform data from HMPTrees to HMP
transformHMPtoHMPTree   Transform data from HMP to HMPTrees
trimToTaxaLevel         Trim a Tree to a Given Level
