ARTP                    Gene and pathway p-values using the Adaptive
                        Rank Truncated Product test
ARTP_pathway            Gene and pathway p-values using ARTP
gene.list               List to describe the gene-SNP file
gene_SNP_data           Gene-SNP data
geno_data               Sample genotype data
obs_pvalues             Observed p-values
perm_pvalues            Permutation p-values
pheno.list              List to describe the covariate and outcome data
pheno_data              Sample covariate and response data
plot_genes              Gene Plot
runPermutations         Calculate observed and permutation p-values for
                        SNPs
single.marker.test      Single SNP test
snp.list                List to describe the genotype data
