AncStateEstMatrix       Ancestral State Estimation
ChangesInBins           Counts the changes in a series of time bins
Claddis-package         Cladistic disparity
CorrectRootTime         Corrects root.time after taxa have been pruned
                        from a tree
DiscreteCharacterRate   A function for examining discrete character
                        rates
EdgeLengthsInBins       Edge-lengths present in time-bins
EdgeMatch               Edge matching function
FindAncestor            Find ancestor
FindLinkedEdges         Find linked edges for a tree
Gauthier1986            Character-taxon matrix from Gauthier 1986
GetAllStateChanges      Finds all state changes on a tree using
                        stochastic character mapping
GetDescendantEdges      Gets descendant edges of an internal node
GetNodeAges             Returns node ages for a time-scaled tree
Michaux1989             Character-taxon matrix from Michaux 1989
MinSpanTreeEdges        Get edges of minimum spanning tree
MorphDistMatrix         Get distance matrices from a cladistic matrix
ReadMorphNexus          Reads in a morphological #NEXUS data file
SafeTaxonomicReduction
                        Safe Taxonomic Reduction
TrimMorphDistMatrix     Trims a morphological distance matrix
