ASC                     Identify DCGs (Differential Coexpressed Genes)
                        based on 'Average Specific Connection'
DCGL-package            Differential Co-expression Analysis and
                        Differential Regulation Analysis of Gene
                        Expression Microarray Data
DCe                     Identify DCGs (Differentially Coexpressed
                        Genes) and DCLs (Differentially Coexpressed
                        Links)
DCp                     Identify DCGs (Differential Coexpressed Genes)
                        based on the 'Differential Coexpression
                        Profile'
DCsum                   Summarize DCGs and DCLs
DRplot                  Visualization of DRLs
DRrank                  Ranking Regulators by Target Enrichment Density
                        (TED) and Targets' DCL Density (TDD)
DRsort                  Identify DRGs (Differential regulated Genes)
                        and DRLs (Differential regulated Links)
LFC                     Select DCLs based on 'Limit Fold Change' model
LRC                     Identify DCGs (Differential Coexpressed genes)
                        based on 'Log Ratio Connections'
RIF                     Ranking Regulators by Regulator Impact Factor
                        (RIF) Method
WGCNA                   Identify DCGs (Differential Coexpressed Genes)
                        based on the 'Weighted Gene Coexpression
                        Network Analysis'
expressionBasedfilter   Filter genes according to expression level
exprs                   Real dataset pulled down from GEO
                        (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE17967)
exprs_design            Experiment design of microarray matrix data
intgenelist             Interesting genes list
percentLinkfilter       Filter gene coexpression links according to the
                        top percent of expression correlation
                        coefficient value
qLinkfilter             Filter gene coexpression links according to the
                        q-values of expression correlation values
rLinkfilter             Filter gene coexpression links according to
                        correlation coefficient value
tf2target               The dataset of human Transcription Factors
                        regulate potential target genes
varianceBasedfilter     To filter genes according to expression
                        variability
