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| DLMtool-package | Data-Limited Methods Toolkit |
| area1MPA | An marine reserve in area 1 |
| avail | What objects of this class are available |
| BK | Beddington and Kirkwood life-history method (simple version) |
| BK_CC | Beddington and Kirkwood life-history method combined with catch curve analysis |
| BK_ML | Beddington and Kirkwood life-history analysis with mean-length estimator of current abundance |
| Can | What data-limited methods can be applied to this DLM data object? |
| Cant | What methods can't be applied to this DLM data object |
| comp | Comparison plots for individual simulations |
| CompSRA | Age-composition-based estimate of current stock depletion given constant Z |
| DBSRA | Depletion-Based Stock Reduction Analysis |
| DBSRA4010 | Depletion-Based Stock Reduction Analysis paired with 40-10 rule |
| DBSRA_40 | Depletion-Based Stock Reduction Analysis assuming 40 per cent stock depletion |
| DBSRA_ML | Depletion-Based Stock Reduction Analysis using mean length estimator of stock depletion |
| DCAC | Depletion Corrected Average Catch |
| DCAC4010 | Depletion Corrected Average Catch paired with the 40-10 rule |
| DCAC_40 | Depletion Corrected Average Catch assuming 40 per cent stock depletion |
| DCAC_ML | Depletion-Based Stock Reduction Analysis using mean-length estimator of current depletion |
| DD | Delay - Difference Stock Assessment with UMSY and MSY leading |
| DD4010 | Delay - Difference Stock Assessment with UMSY and MSY leading coupled with a 40-10 rule |
| DepF | Depletion Corrected Fratio |
| DLM-class | Class '"DLM"' |
| DLMdat | Data and Operating model objects |
| DLMDataDir | Directory of the installed packaged on your computer |
| DLMtool | Data-Limited Methods Toolkit |
| DynF | Dynamic Fratio method |
| Fdem | Demographic FMSY method |
| Fdem_CC | Demographic FMSY method using catch-curve analysis to estimate recent Z |
| Fdem_ML | Demographic FMSY method that uses mean length data to estimate recent Z |
| Fleet-class | Class '"Fleet"' |
| FMSYref | A reference FMSY method (uses perfect information about FMSY) |
| FMSYref50 | A reference FMSY method that fishes at half of FMSY (uses perfect information about FMSY) |
| FMSYref75 | A reference FMSY method that fishes at three quarters of FMSY (uses perfect information about FMSY) |
| Fratio | An FMSY/M ratio method |
| Fratio4010 | An FMSY/M ratio method paired with the 40-10 rule |
| Fratio_CC | A data-limited method that uses FMSY/M ratio and a naive catch-curve estimate of recent Z |
| Fratio_ML | An FMSY/M ratio method that uses a mean length estimator of recent Z |
| GB_CC | Geromont and Butterworth Constant Catch Harvest Control Rule |
| GB_slope | Geromont and Butterworth index slope Harvest Control Rule |
| GB_target | Geromont and Butterworth target Harvest Control Rule |
| Gcontrol | G-control harvest control rule |
| getmov | Optimization function to find a movement model that matches user specified movement characteristics. |
| getq | Optimization function that find the catchability (q where F=qE) value required to get to user-specified stock depletion (current biomass / unfished biomass) |
| getQuota | Calculate quota |
| initialize-method | ~~ Methods for Function 'initialize' ~~ |
| initialize-methods | ~~ Methods for Function 'initialize' ~~ |
| Kplot | KOBE plot: a projection by projection plot of F/FMSY and B/BMSY |
| lmmodel-class | Class '"lmmodel"' |
| matsizlim | A data-limited method in which fishing vulnerability is set according to the maturity curve |
| MMHCR | Mark Maunder's Harvest Control Rule |
| movfit | Optimization function that returns the squared difference between user specified and calculated movement parameters. |
| MSE-class | Class '"MSE"' |
| Needed | Data needed to get DLM methods running |
| Observation-class | Class '"Observation"' |
| OM-class | Class '"OM"' |
| plot-method | ~~ Methods for Function 'plot' ~~ |
| plot-methods | ~~ Methods for Function 'plot' ~~ |
| Pplot | A projection by projection plot of F/FMSY and B/BMSY |
| qopt | Internal optimization function that find the catchability (q where F=qE) value required to get to user-specified stock depletion (current biomass / unfished biomass) |
| Rcontrol | Harvest Control Rule using prior for intrinsic rate of increase |
| Rcontrol2 | Harvest Control Rule using prior for intrinsic rate of increase with a quadratic approximation to surplus production |
| replic8 | Enlarge (replicate) a DLM data object to create an additional dimension for simulation / sensitivity testing |
| Required | What methods need what data |
| runMSE | Run a Management Strategy Evaluation |
| Sam | Conduct stock assessment |
| SBT1 | SBT simple harvest control rule |
| SBT2 | SBT complex harvest control rule |
| Sense | Sensitivity analysis |
| SPMSY | Surplus Production MSY method |
| SPSRA | Surplus Production Stock Reduction Analysis |
| SPSRA_ML | Surplus Production Stock Reduction Analysis using a mean-length estimate of current stock depletion |
| Stock-class | Class '"Stock"' |
| summary-method | ~~ Methods for Function 'summary' ~~ |
| summary-methods | ~~ Methods for Function 'summary' ~~ |
| Tplot | A trade-off plot for an MSE object |
| YPR | Yield Per Recruit analysis to get FMSY proxy F01 |
| YPR_CC | Yield Per Recruit analysis to get FMSY proxy F01 paired to a naive catch curve estimate of recent Z |
| YPR_ML | Yield Per Recruit analysis to get FMSY proxy F01 paired with a mean-length estimate of current stock size |