DNAprofiles-package     DNA profiles analysis
as.dbcompare            Convert output of ibs.pairwise.db for plotting
                        using DNAtools package
check.dist              Check if dist is properly specified for use
                        with sim.q, exact.q
dist.pair.cdf           CDF of product of a pair of distributions (one
                        cumulative)
dist.unique.events      Trim probability distribution to unique events
                        with positive probability
dists.product           Distribution of product of several discrete
                        random variables
dists.product.pair      Distribution of product of several discrete
                        random variables as product X*Y
enum.profiles           Enumerate all attainable genotypes
est.freqs               Estimate allelic frequencies in reference
                        database
exact.q                 Compute exact LR exceedance probabilities
find.kth.element        Quickly finds the k'th largest element in a
                        (large) vector
freqsNLngm              Allelic frequencies at 15 NGM loci
freqsNLsgmplus          Allelic frequencies at 10 SGMplus loci
freqsUScaucs            Allelic frequencies at 13 CODIS loci
get.freqs               Retrieve the allele frequencies of a profiles
                        object
get.labels              Retrieve the allele labels from the allele
                        frequencies
get.markers             Retrieve the markers of a profiles object
homozygous              For which markers is the profile
                        homozygous/heterozygous?
ibdprobs                IBD probabilities
ibs.db                  Counts IBS alleles between case profile and all
                        database profiles
ibs.dist                Computes distribution of number of IBS alleles
                        for profiles with stated relationship
ibs.pairs               Counts IBS alleles between profile pairs
ibs.pairwise.db         Pairwise comparison of all database profiles on
                        IBS alleles
ibs.pairwise.db.exp     Compute expected number of profiles pairs in a
                        database that match fully and partially at each
                        number of loci
ibs.pairwise.pr         Compute the probabilities that two profiles
                        match a number of loci fully/partially
ki                      Computes Kinship Indices (KIs) for pairs of
                        profiles
ki.cdf                  Computes CDF of KI between case profile and
                        profile with stated relationship
ki.db                   Computes KIs for case profile(s) with all
                        database profiles
ki.dist                 Computes distribution of KI for profiles with
                        stated relationship
ki.ibs.joint.dist       Computes joint distribution of KI and IBS for
                        profiles with stated relationship
ki.precompute           Pre-computes KIs for use with 'ki.db' function
normalize.freqs         Normalizes allele frequencies such that their
                        sum is 1
pr.next.allele          Probability of seeing next allele (Dirichlet
                        sampling)
pr.next.alleles         Probability of seeing next alleles (Dirichlet
                        sampling)
print.profiles          print profiles object
profiles                profiles object
profiles extract        profiles extract
profiles.to.chars       Obtain STR repeat numbers of profiles as
                        character matrix
recode.freqs            Recode allelic frequencies with different
                        levels
rmp                     Random match probability of profile(s)
sample.pairs            Sample random profile pairs with given
                        relationship (sibs, parent/offspring, etc.)
sample.profiles         Sample random unrelated profiles
sample.relatives        Sample random relatives of one profile or many
                        profiles
sim.q                   Estimate LR exceedance probabilities (with
                        importance sampling)
write.genepop           Export to GenePop/LinkDos format
