EcoSimR                 EcoSimR EcoSimR is a collection of functions
                        for calculating community metrics and
                        algorithms for randomizing community data for
                        null model analysis. Current modules are
                        included for the analysis of niche overlap,
                        body size overlap, and species co-occurrence.
                        EcoSimR also allows users to define their own
                        functions and algorithms to develop new null
                        models.
c_score                 CScore Co-occurrence Metric
c_score_skew            CScoreSkew Co-occurrence Metric
c_score_var             CScoreVariance Co-occurrence Metric
checker                 Checker Co-occurrence Metric
cooc_null_model         Co-Occurrence Null model
czekanowski             Czekanowski Niche Overlap Metric
czekanowski_skew        CzekanowskiSkew Niche Overlap Metric
czekanowski_var         CzekanowskiVariance Niche Overlap Metric
dataMacWarb             MacArthur's (1958) warbler data This data
                        matrix is from MacArthur's classic (1958) paper
                        on the coexistence of 5 species of New England
                        warbler. Each row of the data matrix is a
                        different species of warbler, and each column
                        is one of 16 different subregions of a
                        coniferous tree. Each entry is the percentage
                        of time that each species was observed foraging
                        in a different subregion of the tree (see
                        Figures 2-4 in MacArthur 1958). Zeroes indicate
                        subregions of the tree in which a species was
                        not recorded foraging.
dataRodents             Desert rodent data set This data vector is from
                        Brown's (1975) study of the coexistence of
                        desert rodent species. Each entry is the
                        average adult body mass in grams of six
                        co-occurring species of Sonoran Desert rodents.
dataWiFinches           West Indian Finches data This data frame is a
                        binary presence-absence matrix for West Indies
                        finches (Fringillidae). Each row is a different
                        species of finch and each column is one of the
                        19 major islands in the West Indies. Entries
                        indicate the presence (1) or absence (0) of a
                        species on an island. Data from Gotelli and
                        Abele (1982).
min_diff                MinDiff Size Overlap Metric
min_ratio               MinRatio Size Overlap Ratio Metric
niche_null_model        Niche overlap null models
null_model_engine       Run null model
pianka                  Pianka Niche Overlap Metric
pianka_skew             PiankaSkew Niche Overlap Metric
pianka_var              PiankaVariance Niche Overlap Metric
plot.coocnullmod        Co-Occurrence Model Plot Function
plot.nichenullmod       Niche Null Model Plot function
plot.nullmod            plot a histogram null model
plot.sizenullmod        Size Ratio Plot Function
ra1                     RA1 Niche Overlap Randomization Algorithm
ra2                     RA2 Niche Overlap Randomization Algorithm
ra3                     RA3 Niche Overlap Randomization Algorithm
ra4                     RA4 Niche Overlap Randomization Algorithm
ranMatGen               Random Matrix Generator
reproduce_model         Reproduce a result
sim1                    Sim1 Co-occurrence Randomization Algorithm
sim10                   Sim10 Co-occurrence Randomization Algorithm
sim2                    Sim2 Co-occurrence Randomization Algorithm
sim3                    Sim3 Co-occurrence Randomization Algorithm
sim4                    Sim4 Co-occurrence Randomization Algorithm
sim5                    Sim5 Co-occurrence Randomization Algorithm
sim6                    Sim6 Co-occurrence Randomization Algorithm
sim7                    Sim7 Co-occurrence Randomization Algorithm
sim8                    Sim8 Co-occurrence Randomization Algorithm
sim9                    Sim9 Co-occurrence Randomization Algorithm
sim9_single             sim9_single
size_gamma              SizeGamma Size Overlap Randomization Algorithm
size_null_model         Size Ratio
size_source_pool        SizeSourcePoolDraw Size Overlap Randomization
                        Algorithm
size_uniform            SizeUniform Size Overlap Randomization
                        Algorithm
size_uniform_user       SizeUser Size Overlap Randomization Algorithm
species_combo           SpeciesCombo Co-occurrence Metric
summary.coocnullmod     Generic function for calculating null model
                        summary statistics.
summary.nichenullmod    Generic function for calculating null model
                        summary statistics
summary.nullmod         Generic function for calculating null model
                        summary statistics
summary.sizenullmod     Generic function for calculating null model
                        summary statistics
v_ratio                 SchlutersVRatio Co-occurrence Metric
var_diff                VarDiff Size Overlap Ratio Metric
var_ratio               VarRatio Size Overlap Ratio Metric
vector_sample           Vector Sample Function
