cbindFiles              Combine a sequence of files by columns
convertPed              Convert large ped files by creating unique IDs,
                        converting allele coding and extracting a
                        selection of SNPs
gwaaToHaplin            Convert a loaded GenABEL 'gwaa.data' object to
                        a Haplin format character matrix
haplin                  Fitting log-linear models to case-parent triad
                        and/or case-control data
haplinSlide             Fit 'haplin' in a series of sliding windows
                        over a sequence of markers/SNPs
haplinTDT               Transmission disequilibrium tests for
                        case-parent triad data
haptable                Create haplin table
lineByLine              Line-by-line modification of files
output                  Save files with summary, table, and plot from a
                        haplin object.
pQQ                     QQ-plot with confidence intervals for a vector
                        of p-values
pedToHaplin             Convert from ped format data to Haplin format
plot.haplin             Plot a haplin object
plot.haplinTDT          Plot a haplinTDT object
plot.haptable           Plot a haptable object
prepPed                 Extract family and phenotype information from a
                        ped-format file, to prepare for use in Haplin
print.haplin            Print a haplin object
print.summary.haplin    Print the summary of a haplin object
rbindFiles              Combine a sequence of files by rows
snpPos                  Find the column numbers of SNP identifiers/SNP
                        numbers in a ped file
snpPower                Power calculations for a single SNP
snpSampleSize           Sample size calculations for a single SNP
suest                   Compute a joint p-value for a list of haplin
                        fits (usually from a sliding window approach),
                        correcting for multiple testing.
summary.haplin          Summary of a haplin object
summary.haplinTDT       Summary of a haplinTDT object
toDataFrame             Stack dataframes from haplinSlide into a single
                        dataframe
