Alzheimer               Genotype frequencies for 70 SNPs related to
                        Alzheimer's disease
GenerateSamples         Generate genotypic compositions
HWAlltests              Perform all tests for Hardy-Weinberg
                        equilibrium
HWAlr                   Compute additive log-ratio transformation
HWAlrPlot               Plot genetic markers in additive log-ratio
                        coordinates
HWChisq                 Chi square tests for Hardy Weinberg equilibrium
HWChisqMat              Matrix version of HWChisq
HWClr                   Compute the centred log-ratio transformation
HWClrPlot               Plot genetic markers in centred log-ratio
                        coordinates
HWCondProbAB            Compute probability of a genotypic sample
HWD                     Compute disequilibrium statistic D
HWData                  Generate genetic marker data in or out of
                        Hardy-Weinberg Equilibrium
HWExact                 Exact test for Hardy-Weinberg equilibrium
HWExactMat              Matrix version of HWExact
HWGenotypePlot          Scatter plot of the genotype frequencies
HWIlr                   Compute isometric log ratio coordinates.
HWIlrPlot               Plot bi-allelic genetic markers in isometric
                        log ratio coordinates
HWLratio                Likelihood ratio test for Hardy Weinberg
                        equilibrium
HWMissing               Test a bi-allelic marker for Hardy-Weinberg
                        equilibrium in the presence of missing genotype
                        information.
HWPerm                  Permutation test for Hardy-Weinberg equilibrium
HWPower                 Compute the power of a test for Hardy-Weinberg
                        equilibrium.
HWQqplot                A Q-Q plot for Hardy-Weinberg equilibrium
HWTernaryPlot           Ternary plot with the Hardy-Weinberg acceptance
                        region
HWf                     Computation of inbreeding coefficient
HapMapCHBChr1           Genotype frequencies for 225 SNPs on chromosome
                        1 of the CHB population.
HardyWeinberg-package   Graphical tests for Hardy-Weinberg equilibrium
MakeCounts              Create genotype counts from bi-allelic marker
                        data
MakeFactor              Make factors from genotyping data
Markers                 SNP data and intensities
Mourant                 Genotype frequencies for blood group locus MN
UniqueGenotypeCounts    Extract unique genotypic compositions from a
                        matrix
af                      Function to compute allele frequencies
fisherz                 Fisher's z transformation
ifisherz                Inverse Fisher z transformation
mac                     Compute the minor allele count.
maf                     Function to compute minor allele frequencies
recode                  Recode genotype information
vaf                     Computes the sample variance of the minor
                        allele frequencies
