GENEapply               An internal C++ function
JAGUAR-package          Joint analysis of genotype and group-specific
                        variability using a novel score test to map
                        eQTL
ProcessJaguarResults    Obtain significant gene-SNP pairs based on a
                        predetermined threshold value
RowMin                  An internal C++ function
RowSums                 An internal C++ function
SliceGeneData           Slice gene expression data into multiple
                        partitions
calcThreshold           Calculates various threshold values to control
                        for the family-wise error rate (FWER).
example.data            An example gene expression and genotype data
gamma_test              An internal C++ function
getMinP                 An internal C++ function
jag_param               An internal C++ function
jaguar                  Runs the joint score test statistic approach
jaguarSIM               Run null or power simulations
lin                     Efficient Monte Carlo approach to adjust for
                        multiplicity
plotqtl                 Plot of eQTL results
scoreTest               An internal C++ function
snpOUT                  An internal C++ function
