DataStructure           Data structure of LGS output
LGS-package             LGS: A package to simulate Linkage Group
                        Selection
biasLGS                 Bias a vector of allele ratios (LGS)
bottleneck              Samples a population to simulate a bottleneck
crossLGS                Perform advanced crosses
exp2JoinMap             Make input file for JoinMap
haplo2string            Convert haplotypes to strings
normPop                 Normalize populations
pcMap                   A map file for Plasmodium chabaudi
plotBins                Plot z-scores of bins of markers
plotLGS                 Plot the output of a LGS experiment as a genome
                        scan
repLGS                  Replicate LGS experiments
selClones               Reproduce clonally and select a population
selDepth                Find depth of a selection valley
simLGS                  Simulate crosses and apply selection
summaryLGS              Summary statistics of an LGS object
topClones               Count the most represented clones
zbins                   z-score: Assessing selection
