export(colIntersect, commonGenes, compute.RQ, computeAlpha, computeOrdering, conting.tab, cv.filter, entitybuild2, flip, fold.change, gene.list, gene.select.FC, join.DEG, join.results, MAP.genes, MAPmatrix, MAPsig1, MAPsig2, make.matrix, MCtest, mergedata, meta.test,  metaheat,metaheat2, metagene, metalist.to.matrix, patternMatch, patternMatch.strong, patternmatrix, patternToString, performSOGL, plot.SOGLresult, plotgene, plotpattern, prelimScore, prepareData, preparePermutations,  RandomScore, rank.genes, ratio, sd.filter, selectAlpha, selectGenes, selectClass, sigScore, test.group.shuffle, Z, T.select, plotES, plotQvsChi, MAPmatrix,rank.genes.adv,probs.to.matrix,

posterior.mean, mergeExprs2, 
GEDM, clinical, datanames,
zScores, zScorePermuted, zScoreFDR, multExpFDR,
MAP.Matches, RankProduct, METRADISC, VennMapper, ES.GeneMeta, metaMA,
clinical.sum
)

exportClasses(MetaArray)
exportMethods(plot, print, show, as.list, "GEDM<-", "clinical<-", "datanames<-")
import(xtable, methods)
importFrom(graphics, plot)
importFrom(MergeMaid, mergeExprs, mergeget, AverageDuplicates)
importFrom(gtools, permute, invalid)
importFrom(metaArray, Zscore)
importFrom(genefilter, rowttests)
importFrom(GeneMeta, CountPlot, dstar, f.Q, IDRplot, mu.tau2, sigmad,tau2.DL, var.tau2)
importMethodsFrom(GeneMeta, getdF) 









