MCMC.OTU-package        Bayesian analysis of metabarcoding counts data
OTUsummary              Summarizes and plots results of mcmc.otu()
                        function series.
getNormalizedOTUdata    Extracts mcmc.otu model predictions
green.data              Symbiodinium sp. ITS2 OTUs from Orbicella
                        franksi and O. faveolata
logLin                  prepares OTU counts data for PCA analysis using
                        log-linear-hybrid transform
mcmc.otu                Analyzes multivariate counts data using
                        poisson-lognormal mixed model
mcmc.pval               calculates p-value based on Bayesian z-score or
                        MCMC sampling
otuByAutocorr           Selects OTUs for which MCMC-based parameter
                        estimates are reliable.
otuStack                Prepares OTU counts data for MCMC model fitting
                        using mcmc.otu().
padjustOTU              Adjusts p-values in the OTU summary for
                        multiple comparisons.
panel.cor               accessory function for pairs() to display
                        Pearson correlations
panel.cor.pval          accessory function for pairs() to display
                        pvalue of the Pearson correlation
purgeOutliers           Removes outlier samples and OTUs.
signifOTU               Finds differentially represented OTUs.
startedLog              prepares OTU counts data for PCA analysis using
                        started-log transform
summaryPlotOTU          Wrapper function for ggplot2 to make bar and
                        line graphs of mcmc.otu() results
