Package: MPAgenomics
Type: Package
Title: Multi-Patient Analysis of Genomic Markers
Version: 1.1.2
Date: 2014-10-29
Author: Quentin Grimonprez with contributions from Guillemette Marot and Samuel
    Blanck. Some functions use code created by Sjoerd Vosse, Mark van de Wiel,
    Pierre Neuvial, Henrik Bengtsson.
Maintainer: Samuel Blanck <samuel.blanck@inria.fr>
Description: Preprocess and analysis of genomic data. MPAgenomics
    provides wrappers from commonly used packages to streamline their repeated
    manipulation, offering an easy-to-use pipeline. The segmentation of
    successive multiple profiles is performed with an automatic choice of
    parameters involved in the wrapped packages. Considering multiple profiles
    in the same time, MPAgenomics wraps efficient penalized regression methods
    to select relevant markers associated with a given outcome.
License: GPL (>= 2)
Copyright: Inria 2012-2014.
Imports: R.utils,changepoint(>= 1.1),glmnet,cghseg,HDPenReg(>=
        0.90),spikeslab
Suggests:
        CGHcall,aroma.affymetrix,aroma.cn,aroma.core,aroma.light,snowfall,R.devices,R.filesets,R.methodsS3,R.oo,matrixStats
Packaged: 2014-11-05 08:45:31 UTC; grimonprez
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-05 20:25:37
Built: R 3.1.2; ; 2014-11-06 13:11:00 UTC; unix
