CNAobjectToCGHcallObject
                        Convert CNAobject
HDlarsbivariate         lars algorithm for bivariate signal
MPAgenomics-package     Multi-Patient Analysis of Genomic Markers
SignalNormalization     Normalization process
addChipType             Add a new chip type to the existing aroma
                        architecture
addData                 Add a new data-set to the existing aroma
                        architecture
callingObject           Create the list of parameters for
                        callingProcess function
callingProcess          Calling aberrations in segmented copy-number
                        signal.
cnSegCallingProcess     Segment a copy-number signal and call the found
                        segments.
createArchitecture      Create aroma architecture and copy files
createEmptyArchitecture
                        Create aroma architecture
filterSeg               Filter segments
findPlateau             Find the best choice of segmentation parameter.
getCopyNumberSignal     Extract copy-number signal from aroma files
getFracBSignal          Extract allele B fraction signal from aroma
                        files
getGenotypeCalls        Extract genotype calls from aroma files
getListOfFiles          Get the contents of a data folder
getSymFracBSignal       Extract symmetrized allele B fraction signal
                        from aroma files
markerSelection         markers selection
segFracBSignal          segmentation function for the allele B fraction
segmentation            segmentation function
segmentationAroma       segmentation function
segmentationObject      Create the list of parameters for segmentation
                        function
signalPreProcess        Normalization process
symmetrizeFracB         symmetrize an allele B fraction signal
variableSelection       SNPs selection
