Compute.input.variables
                        Compute Mutation Counts from Tumor Exome
                        Somatic Mutations
MSIseq-package          Assess Tumor Microsatellite Instability with a
                        Decision Tree Classifier from Tumor Exome
                        Somatic Mutations
MSIseq.classify         Classify Microsatellite Instability with MSIseq
                        Classifier
MSIseq.train            Build Microsatellite Instability Classification
                        Model with Training Dataset
NGStestdata             Mutation Annotation Data with Test Set Samples
NGStestseqLen           Capture Sequence Length for Test Set Samples
NGStesttype             Cancer Types for the TCGA Test Set Samples
NGStrainclass           MSI Status Classification for the TCGA Training
                        Set Samples
NGStraindata            Mutation Annotation Data with Training Set
                        Samples
NGStrainseqLen          Capture Sequence Length for Training Set
                        Samples
NGStraintype            Cancer Types for the TCGA Training Set Samples
find.mono.repeats       Find Mono-nucleotide Repeats
read.fasta              Read Fasta File
test.mutationNum        Table of Mutation Numbers in Test Set Samples
train.mutationNum       Table of Mutation Numbers in Train Set Samples
