BinBam                  BinBam
BinBam.gcCorrect        BinBam.gcCorrect
ReadBed                 ReadBed
createReferenceSetFromCounts
                        createReferenceSetFromCounts
evalPerformance         evalPerformance
makeBinnedCountsFile    makeBinnedCountsFile
makeGCContentData       makeGCContentData
makeGCContentPerPos     makeGCContentPerPos
outcomes                set of simulated outcomes data
plotTestSample          plotTestSample
print.rapidr.ref        print.rapidr.ref
print.rapidr.test       print.rapidr.test
testUnknowns            testUnknowns
writeCleanedCountsFile
                        writeCleanedCountsFiles
writeResultsToFile      writeResultsToFile
