Rsampletrees-package    Pre and Post-Processing of sampletrees output
addTreeStat             Add tree statistics to a treeoutput object
addTrees                Read in trees and add them to the tree output
                        object
changeArgs.treeoutput   Modify the settings stored in a sampletrees
                        treeoutput object
checkArgs               Error checking for the arguments to sampletrees
estimateHap             Estimate and write haplotype probabilities and
                        initial values to files
merge.treeoutput        Merge the results from two runs of sampletrees
newArgs                 Create or modify a sampletrees settings object
plot.treeoutput         Plot selected output of a sampletrees run
print.pars              Nice display of tags and values of a
                        sampletrees settings object
print.treeoutput        Nice display of a treeoutput object
readArgs                Read arguments for a sampletrees run from a
                        settings file
readOutput              Read in sampletrees output
readTrees               Read in trees from a run of sampletrees.
restartRun              Set up a settings object for continuing a
                        previous sampletrees run
setWeights              Set weights for the sampletrees proposal
                        distributions
summary.treeoutput      Summary of a tree output object
treeapply               Apply a function to the sampled trees
writeArgs               Write arguments for a sampletrees run to a file
                        in the format required for sampletrees
writeTreeoutput         Write the results of a sampletrees run to file
