addCustomTargets	addCustomTargets-methods
addCytoband	addCytoband-methods
adjust4maxprobes	adjust4maxprobes-methods
attachResult	attachResult-methods
attachResult,DEMIExperiment,DEMIDiff-method	attachResult-methods
calcHypergeoExon	calcHypergeoExon-methods
calcHypergeoProb	calcHypergeoProb-methods
celMatrixNormalize	celMatrixNormalize-methods
celMatrixNormalize,DEMIExperiment,function-method	celMatrixNormalize-methods
check4probe	check4probe-methods
check4probe,DEMIExperiment,vector-method	check4probe-methods
check4target	check4target-methods
check4target,DEMIExperiment,vector-method	check4target-methods
checkDEMIExperiment_analysis	checkDEMIExperiment_analysis
checkDEMIExperiment_celpath	checkDEMIExperiment_celpath
checkDEMIExperiment_experiment	checkDEMIExperiment_experiment
checkDEMIExperiment_maxprobes	checkDEMIExperiment_maxprobes
checkDEMIExperiment_maxtargets	checkDEMIExperiment_maxtargets
checkDEMIExperiment_normalization	checkDEMIExperiment_normalization
checkDEMIExperiment_pmsize	checkDEMIExperiment_pmsize
cleanorganismname	cleanorganismname-methods
cluster	cluster-methods
cluster,DEMIClust-method	cluster-methods
createGroup	createGroup-methods
createGroup,DEMIClust-method	createGroup-methods
customObject	customObject-methods
customObject,DEMIClust-method	customObject-methods
demi	DEMIWrap-methods
demi.comp.test	demi.comp.test-methods
demi.t.test	demi.t.test-methods
demi.wilcox.test	demi.wilcox.test-methods
demi.wilcox.test.fast	demi.wilcox.test.fast-methods
DEMICel	DEMICel-methods
DEMICel-class	DEMICel-class
DEMIClust	DEMIClust-methods
DEMIClust-class	DEMIClust-class
DEMIDiff	DEMIDiff-methods
DEMIDiff-class	DEMIDiff-class
demiequal	demiequal-methods
DEMIExperiment	DEMIExperiment-methods
DEMIExperiment-class	DEMIExperiment-class
DEMIGroup	DEMIGroup-methods
DEMIGroup-class	DEMIGroup-class
DEMIMessages	DEMIMessages
DEMIPathway	DEMIPathway-methods
DEMIResult-class	DEMIResult-class
demisummary	demisummary-methods
demisummary,DEMIDiff-method	demisummary-methods
demisummary,DEMIExperiment-method	demisummary-methods
diffexp	diffexp-methods
diffexp,DEMIDiff-method	diffexp-methods
diffSpliceScore	diffSpliceScore-methods
findCytoband	findCytoband-methods
getAlignment	getAlignment-methods
getAlignment,DEMIExperiment-method	getAlignment-methods
getAnalysis	getAnalysis-methods
getAnalysis,DEMIExperiment-method	getAnalysis-methods
getAnnotation	getAnnotation-methods
getAnnotation,DEMIExperiment-method	getAnnotation-methods
getArraytype	getArraytype-methods
getArraytype,DEMIExperiment-method	getArraytype-methods
getCelMatrix	getCelMatrix-methods
getCelMatrix,DEMIExperiment-method	getCelMatrix-methods
getCelpath	getCelpath-methods
getCelpath,DEMIExperiment-method	getCelpath-methods
getCluster	getCluster-methods
getCluster,DEMIClust-method	getCluster-methods
getClustMethod	getClustMethod-methods
getClustMethod,DEMIClust-method	getClustMethod-methods
getCutoffPvalue	getCutoffPvalue-methods
getCutoffPvalue,DEMIClust-method	getCutoffPvalue-methods
getCytoband	getCytoband-methods
getCytoband,DEMIExperiment-method	getCytoband-methods
getDEMIClust	getDEMIClust-methods
getDEMIClust,DEMIDiff-method	getDEMIClust-methods
getExperiment	getExperiment-methods
getExperiment,DEMIClust-method	getExperiment-methods
getExperiment,DEMIDiff-method	getExperiment-methods
getExperiment,DEMIExperiment-method	getExperiment-methods
getGroup	getGroup-methods
getGroup,DEMIClust-method	getGroup-methods
getGroup,DEMIDiff-method	getGroup-methods
getGroup,DEMIResult-method	getGroup-methods
getGroupA	getGroupA-methods
getGroupA,DEMIGroup-method	getGroupA-methods
getGroupB	getGroupB-methods
getGroupB,DEMIGroup-method	getGroupB-methods
getGroupNames	getGroupNames-methods
getGroupNames,DEMIGroup-method	getGroupNames-methods
getIndexA	getIndexA-methods
getIndexA,DEMIGroup-method	getIndexA-methods
getIndexB	getIndexB-methods
getIndexB,DEMIGroup-method	getIndexB-methods
getMaxprobes	getMaxprobes-methods
getMaxprobes,DEMIExperiment-method	getMaxprobes-methods
getMaxtargets	getMaxtargets-methods
getMaxtargets,DEMIExperiment-method	getMaxtargets-methods
getName	getName-methods
getName,DEMIDiff-method	getName-methods
getNormMatrix	getNormMatrix-methods
getNormMatrix,DEMIExperiment-method	getNormMatrix-methods
getOrganism	getOrganism-methods
getOrganism,DEMIExperiment-method	getOrganism-methods
getPathway	getPathway-methods
getPathway,DEMIExperiment-method	getPathway-methods
getProbeLevel	getProbeLevel-methods
getProbeLevel,DEMIDiff,vector,logical-method	getProbeLevel-methods
getProbeLevel,DEMIExperiment,vector,logical-method	getProbeLevel-methods
getResult	getResult-methods
getResult,DEMIDiff-method	getResult-methods
getResult,DEMIExperiment-method	getResult-methods
getResult,DEMIResult-method	getResult-methods
getResultTable	getResultTable-methods
getResultTable,DEMIDiff-method	getResultTable-methods
getResultTable,DEMIExperiment-method	getResultTable-methods
getTargetAnnotation	getTargetAnnotation-methods
getTargetAnnotation,DEMIExperiment,vector-method	getTargetAnnotation-methods
getTargetProbes	getTargetProbes-methods
getTargetProbes,DEMIDiff,vector-method	getTargetProbes-methods
getTargetProbes,DEMIExperiment,vector-method	getTargetProbes-methods
initialize.DEMICel	initialize.DEMICel
initialize.DEMIClust	initialize.DEMIClust
initialize.DEMIDiff	initialize.DEMIDiff
initialize.DEMIExperiment	initialize.DEMIExperiment
initialize.DEMIGroup	initialize.DEMIGroup
initialize.DEMIResult	initialize.DEMIResult
loadAnnotation	loadAnnotation-methods
loadAnnotation,DEMIExperiment,environment-method	loadAnnotation-methods
loadBlat	loadBlat-methods
loadBlat,DEMIExperiment,environment-method	loadBlat-methods
loadCel	loadCel-methods
loadCel,DEMIExperiment-method	loadCel-methods
loadCytoband	loadCytoband-methods
loadCytoband,DEMIExperiment,environment-method	loadCytoband-methods
loadDEMILibrary	loadDEMILibrary-methods
loadDEMILibrary,DEMIExperiment-method	loadDEMILibrary-methods
loadPathway	loadPathway-methods
loadPathway,DEMIExperiment,environment-method	loadPathway-methods
makeDEMIResultsTable	makeDEMIResultsTable-methods
makeUCSCLink	makeUCSCLink-methods
matchExonGene	matchExonGene-methods
norm.quantile	norm.quantile-methods
norm.quantile,matrix-method	norm.quantile-methods
norm.rrank	norm.rrank-methods
norm.rrank,matrix-method	norm.rrank-methods
norm.rrank,numeric-method	norm.rrank-methods
probe.levels	probe.levels-methods
probe.levels,DEMIExperiment,character-method	probe.levels-methods
probe.plot	probe.plot-methods
probe.plot,DEMIExperiment,character-method	probe.plot-methods
totalMatches_all	totalMatches_all-methods
totalMatches_cluster	totalMatches_cluster-methods
validDEMIClust	validDEMIClust
validDEMIExperiment	validDEMIExperiment
wprob	wprob-methods
