cal_img                 Set Max/Min for nifti object by range of data
check_file              Wrapper for getForms with filename
check_nifti             Check if nifti image or read in
checkimg                Check if filename is character or nifti object
checkout                Determine of Q and S forms are consistent
cog                     Image Center of Gravity
datatype                Change Data type for img
drop_img_dim            Drop Image Dimension
fast                    FSL FAST
fast.help               FAST help
flirt                   Register using FLIRT
flirt.help              FLIRT help
flirt_apply             Apply Warp from FLIRT
fnirt                   Register using FNIRT
fnirt.help              FNIRT help
fnirt_with_affine       Register using FNIRT, but doing Affine
                        Registration as well
fnirt_with_affine_apply
                        <brief desc>
fsl_anat                FSL FAST
fsl_anat.help           fsl_anat help
fsl_applywarp           Apply Warp from FNIRT
fsl_applywarp.help      FSL applywarp help
fsl_biascorrect         FSL Bias Correct
fslbet                  Use FSL's Brain Extraction Tool (BET)
fslbet.help             Help for FSL BET
fslbin                  Binarize Image using FSL
fslcmd                  FSL Command Wrapper
fslcog                  Image Center of Gravity (FSL)
fsldir                  Get FSL's Directory
fslerode                Erode image using FSL
fslfill                 Fill image holes
fslhd                   Get NIfTI header using FSL
fslhd.help              FSLhd help
fslhd.parse             Parse FSL Header
fslhelp                 Wrapper for getting fsl help
fslmask                 Mask image using FSL
fslmaths                FSL Maths
fslmaths.help           FSL Maths Help
fslmerge                Merge images using FSL
fslmerge.help           FSLMerge help
fslorient               FSL Orient
fslorient.help          fslorient help
fslrange                Get range of an image
fslreorient2std         FSL Orient to MNI
fslreorient2std.help    fslreorient2std help
fslsmooth               Gaussian smooth image using FSL
fslstats                FSL Stats
fslstats.help           FSL Stats Help
fslsub2                 Subsample image by factor of 2
fslswapdim              FSL Swap Dimensions
fslswapdim.help         fslswapdim help
fslthresh               Threshold an image
fslval                  Get value from FSL header
fslval.help             fslval help
fslview                 Open image in FSLView
fslview.help            FSLView help
get.fsl                 Create command declaring FSLDIR
get.fsloutput           Determine FSL output type
get.imgext              Determine extension of image based on
                        FSLOUTPUTTYPE
getForms                Get Q and S Forms of orientation matrix
have.fsl                Logical check if FSL is accessible
mask_img                Mask nifti Image
melodic                 Run MELODIC ICA
melodic.help            MELODIC help
newnii                  Resets image parameters for a copied nifti
                        object
niftiarr                Make new nifti from array
nii.stub                Grab nii file stubname
onefile                 Creates onefile specification
ortho2                  Orthographic Display, added options
rescale_img             Image Rescaler
robust_window           Window image based on quantiles of Image
susan                   FSL SUSAN noise reduction
susan.help              FSL SUSAN Help
tempimg                 Create temporary nii.gz file for FSL
voxdim                  Gets Voxel Dimensions
window_img              nifti image windower
zero_trans              Change intercept to 0 and slope to 1
zscore_img              Get Z-score over a margin of an img
