addEdge	gRbase-internal
addEdge.gModel	gRbase-internal
adjList2adjMAT	gRbase-internal
adjList2dgCMatrix	gRbase-internal
adjList2ftList	gRbase-internal
adjList2ftM	gRbase-internal
adjList2matrix	gRbase-internal
adjList2tfList	gRbase-internal
adjList2tfM	gRbase-internal
alignArrays	gRbase-internal
alignArrays2	gRbase-internal
all.subsets	gRbase-internal
allSubsets	gRbase-internal
allSubsets0	gRbase-internal
ancestors	GraphAlgo-operations1
ancestralGraph	GraphAlgo-operations1
ancestralSet	GraphAlgo-operations1
aperm2	gRbase-internal
arrayCombine	arrayCombine
arrayExtendDomain	arrayCombine
arrayMargin	gRbase-internal
arrayMargin0	gRbase-internal
arrayMarginChr_cpp	gRbase-internal
arrayOp	gRbase-internal
arrayOp2	gRbase-internal
arrayPerm	gRbase-internal
arrayPerm0	gRbase-internal
as.adjMAT	GraphAlgo-coerce
as.gmData	ZOLD-gmData
as.gmData.array	ZOLD-gmData
as.gmData.data.frame	ZOLD-gmData
as.gmData.table	ZOLD-gmData
as.parray	parray
ashtrees	DATA-ashtrees
BodyFat	DATA-BodyFat
breastcancer	DATA-breastcancer
cad1	DATA-cad
cad2	DATA-cad
carcass	DATA-carcass
carcassall	DATA-carcass
cell2entry	gRbase-internal
cell2entry2_cpp	gRbase-internal
cell2entry_cpp	gRbase-internal
chestSim	DATA-chestSim
chestSim1000	DATA-chestSim
chestSim10000	DATA-chestSim
chestSim100000	DATA-chestSim
chestSim500	DATA-chestSim
chestSim50000	DATA-chestSim
children	GraphAlgo-operations1
closure	GraphAlgo-operations1
coerceGraph	gRbase-internal
coerceGraph.dgCMatrix	gRbase-internal
coerceGraph.graphNEL	gRbase-internal
coerceGraph.igraph	gRbase-internal
coerceGraph.matrix	gRbase-internal
colmat2list	gRbase-internal
colSumsPrim	gRbase-internal
colwiseProd	gRbase-utilities
combnPrim	combnPrim
compareModels	compareModels
compile	compile-propagate
conc2pcor	cov2pcor
cov2pcor	cov2pcor
dag	ugdag
dagList	ugdag
dagList2dgCMatrix	ugdag
dagList2matrix	ugdag
data2parray	parray
dataOrigin	ZOLD-gmData
dataOrigin.gmData	ZOLD-gmData
description	ZOLD-gmData
description.gmData	ZOLD-gmData
description<-	ZOLD-gmData
description<-.gmData	ZOLD-gmData
dgCMatrix2matrix	gRbase-internal
dietox	DATA-dietox
dropEdge	gRbase-internal
dropEdge.gModel	gRbase-internal
dual.rep	gRbase-internal
dumping	DATA-dumping
edgeList	GraphAlgo-edgeList
edgeList.default	GraphAlgo-edgeList
edgeListMAT	GraphAlgo-edgeList
ell	gRbase-internal
ellK	gRbase-internal
entry2cell	gRbase-internal
extendArrayAlong	gRbase-internal
extendArrays	gRbase-internal
extract.power	gRbase-internal
factGrid	gRbase-internal
fit	ZOLD-gRfit
fit.ggm	gRbase-internal
fit.hllm	ZOLD-hllm
fitLoglin	gRbase-internal
formula	ZOLD-gModel
formula.gModel	ZOLD-gModel
formula<-	ZOLD-gModel
formula<-.gModel	ZOLD-gModel
getCellNumberC	gRbase-internal
getCellNumberPrim_cpp	gRbase-internal
getCellNumber_cpp	gRbase-internal
getCliques	GraphAlgo-getClique
getCliques.default	GraphAlgo-getClique
getCliques.graphNEL	GraphAlgo-getClique
getFit	ZOLD-gRfit
getFit.gRfit	ZOLD-gRfit
getFit<-	ZOLD-gRfit
getFit<-.gRfit	ZOLD-gRfit
getPerm	gRbase-internal
ggm	gRbase-internal
glist2adjMAT	GraphAlgo-glist2adjMAT
glist2setMAT	gRbase-internal
gmData	ZOLD-gModel
gmData.gModel	ZOLD-gModel
gmData<-	ZOLD-gModel
gmData<-.gModel	ZOLD-gModel
gModel	ZOLD-gModel
gModel-class	ZOLD-gModel
graphNEL2adjMAT	GraphAlgo-coerce
graphNEL2dgCMatrix	GraphAlgo-coerce
graphNEL2ftM	GraphAlgo-coerce
graphNEL2matrix	GraphAlgo-coerce
graphNEL2tfM	GraphAlgo-coerce
gRbase	gRbase
gRfit	ZOLD-gRfit
gRfit-class	gRbase-internal
hllm	ZOLD-hllm
hllm-class	ZOLD-hllm
igraph-class	gRbase-internal
intersectPrim	gRbase-internal
iplot	iplot
iplot.graphNEL	iplot
ips	gRbase-internal
is.adjMAT	GraphAlgo-is-graph
is.complete	GraphAlgo-operations1
is.DAG	GraphAlgo-is-graph
is.DAG.graphNEL	GraphAlgo-is-graph
is.DAG.Matrix	GraphAlgo-is-graph
is.DAG.matrix	GraphAlgo-is-graph
is.DAGMAT	GraphAlgo-is-graph
is.decomposition	GraphAlgo-operations1
is.DG	GraphAlgo-is-graph
is.DG.graphNEL	GraphAlgo-is-graph
is.DG.Matrix	GraphAlgo-is-graph
is.DG.matrix	GraphAlgo-is-graph
is.DGMAT	GraphAlgo-is-graph
is.insetlist	removeRedundant
is.simplicial	GraphAlgo-operations1
is.subsetof	removeRedundant
is.TUG	GraphAlgo-is-graph
is.TUG.graphNEL	GraphAlgo-is-graph
is.TUG.Matrix	GraphAlgo-is-graph
is.TUG.matrix	GraphAlgo-is-graph
is.TUGMAT	GraphAlgo-is-graph
is.UG	GraphAlgo-is-graph
is.UG.graphNEL	GraphAlgo-is-graph
is.UG.Matrix	GraphAlgo-is-graph
is.UG.matrix	GraphAlgo-is-graph
is.UGMAT	GraphAlgo-is-graph
isGSD_glist	gRbase-internal
isin	removeRedundant
is_sym_MAT	gRbase-internal
jTree	GraphAlgo-rip
jTree.default	GraphAlgo-rip
jTreeMAT	GraphAlgo-rip
junctionTree	GraphAlgo-rip
junctionTree.default	GraphAlgo-rip
junctionTreeMAT	GraphAlgo-rip
lapplyI2V	gRbase-internal
lapplyMatch	gRbase-internal
lapplyV2I	gRbase-internal
latent	ZOLD-gmData
latent.gmData	ZOLD-gmData
latent<-	ZOLD-gmData
latent<-.gmData	ZOLD-gmData
list2rhsf	gRbase-internal
list2rhsFormula	gRbase-internal
lizard	DATA-lizard
lizardAGG	DATA-lizard
lizardRAW	DATA-lizard
makeDimNames	gRbase-internal
MAT2dgCMatrix	gRbase-internal
MAT2ftM	gRbase-internal
MAT2matrix	gRbase-internal
matchPrim	gRbase-internal
math	DATA-mathmark
mathmark	DATA-mathmark
matrix2dgCMatrix	gRbase-internal
matrix2list	gRbase-internal
maxClique	gRbase-internal
maxCliqueMAT	GraphAlgo-getClique
maximalSets	removeRedundant
mcs	GraphAlgo-mcs
mcs.default	GraphAlgo-mcs
mcsmarked	GraphAlgo-mcs
mcsmarked.default	GraphAlgo-mcs
mcsmarkedMAT	GraphAlgo-mcs
mcsMAT	GraphAlgo-mcs
mcsMAT_	gRbase-internal
mildew	DATA-mildew
milkcomp	DATA-milkcomp
milkcomp1	DATA-milkcomp
minimalSets	removeRedundant
minimalTriang	GraphAlgo-minimalTriang
minimalTriang.default	GraphAlgo-minimalTriang
minimalTriangMAT	GraphAlgo-minimalTriang
moralize	GraphAlgo-moralize
moralize.default	GraphAlgo-moralize
moralizeMAT	GraphAlgo-moralize
mpd	GraphAlgo-mpd
mpd.default	GraphAlgo-mpd
mpdMAT	GraphAlgo-mpd
names2pairs	gRbase-internal
newgmData	ZOLD-gmData
nextCell	gRbase-internal
nextCellSlice	gRbase-internal
nextCellSlicePrim_cpp	gRbase-internal
nextCellSlice_cpp	gRbase-internal
nextCell_cpp	gRbase-internal
nLevels	ZOLD-gmData
nLevels.array	gRbase-internal
nLevels.gmData	ZOLD-gmData
nLevels.parray	gRbase-internal
nLevels<-	ZOLD-gmData
nLevels<-.gmData	ZOLD-gmData
nominal	ZOLD-gmData
nominal.gmData	ZOLD-gmData
nominal<-	ZOLD-gmData
nominal<-.gmData	ZOLD-gmData
nonEdgeList	GraphAlgo-edgeList
nonEdgeList.default	GraphAlgo-edgeList
nonEdgeListMAT	GraphAlgo-edgeList
Nutrimouse	DATA-Nutrimouse
obs	ZOLD-gmData
observations	ZOLD-gmData
observations.gmData	ZOLD-gmData
observations<-	ZOLD-gmData
observations<-.gmData	ZOLD-gmData
ordinal	ZOLD-gmData
ordinal.gmData	ZOLD-gmData
ordinal<-	ZOLD-gmData
ordinal<-.gmData	ZOLD-gmData
outerPrim	gRbase-internal
outfun	gRbase-internal
pairs2num	gRbase-internal
parents	GraphAlgo-operations1
parray	parray
partial.corr.matrix	gRbase-internal
permuteCellEntries	gRbase-internal
permuteCellEntries_cpp	gRbase-internal
plot.ripOrder	gRbase-internal
print.gmData	ZOLD-gmData
print.gModel	ZOLD-gModel
print.gRfit	ZOLD-gRfit
print.parray	gRbase-internal
print.ripOrder	gRbase-internal
processFormula	gRbase-internal
propagate	compile-propagate
propagateLS_cpp	gRbase-internal
properties_glist	gRbase-internal
querygraph	GraphAlgo-querygraph
random_dag	randomDag
rats	DATA-rats
readf	gRbase-internal
reinis	DATA-reinis
removeRedundant	removeRedundant
rhsf2list	gRbase-internal
rhsFormula2list	gRbase-internal
rip	GraphAlgo-rip
rip.default	GraphAlgo-rip
ripMAT	GraphAlgo-rip
rowmat2list	gRbase-internal
rowSumsPrim	gRbase-internal
selectOrder	gRbase-internal
setdiffPrim	gRbase-internal
shortNames	ZOLD-gmData
shortNames.gmData	ZOLD-gmData
shortNames<-	ZOLD-gmData
shortNames<-.gmData	ZOLD-gmData
showf	gRbase-internal
simplicialNodes	GraphAlgo-operations1
simulateArray	simulateArray
slice2entry	gRbase-internal
slice2entry_cpp	gRbase-internal
solveSPD	gRbase-internal
sp_setXtf1	gRbase-internal
stepwise	gRbase-internal
stepwise.default	gRbase-internal
stepwise.hllm	ZOLD-hllm
subsetof	removeRedundant
summary.gmData	ZOLD-gmData
summary.gRfit	ZOLD-gRfit
SYMMAT2ftM	gRbase-internal
tableDiv	table-operations
tableMargin	table-operations
tableMult	table-operations
tableOp	table-operations
tableOp2	table-operations
tablePerm	table-operations
tableSlice	table-operations
tableSlicePrim	table-operations
topoSort	GraphAlgo-topoSort
topoSort.default	GraphAlgo-topoSort
topoSortMAT	GraphAlgo-topoSort
topoSortMAT_	gRbase-internal
topoSort_vparList	GraphAlgo-topoSort
triangulate	GraphAlgo-triangulate
triangulate.default	GraphAlgo-triangulate
triangulateMAT	GraphAlgo-triangulate
triangulateMAT_	gRbase-internal
ug	ugdag
ugList	ugdag
ugList2dgCMatrix	ugdag
ugList2matrix	ugdag
uniquePrim	gRbase-internal
unlistPrim	gRbase-internal
update.gModel	gRbase-internal
validVarTypes	ZOLD-validVarTypes
valueLabels	ZOLD-gmData
valueLabels.array	gRbase-internal
valueLabels.gmData	ZOLD-gmData
valueLabels.parray	gRbase-internal
valueLabels<-	ZOLD-gmData
valueLabels<-.gmData	ZOLD-gmData
varNames	ZOLD-gmData
varNames.array	gRbase-internal
varNames.gmData	ZOLD-gmData
varNames.parray	gRbase-internal
varNames<-	ZOLD-gmData
varNames<-.gmData	ZOLD-gmData
varTypes	ZOLD-gmData
varTypes.gmData	ZOLD-gmData
varTypes<-	ZOLD-gmData
varTypes<-.gmData	ZOLD-gmData
vpaL2tfM	GraphAlgo-glist2adjMAT
vpaList2adjMAT	GraphAlgo-glist2adjMAT
vpar	GraphAlgo-vpar
vpar.graphNEL	GraphAlgo-vpar
vpar.Matrix	GraphAlgo-vpar
vpar.matrix	GraphAlgo-vpar
vparMAT	GraphAlgo-vpar
which.arr.ind	gRbase-internal
which_matrix_index	gRbase-internal
wine	DATA-wine
