Package: jaatha
Version: 2.7.0
Date: 2014-11-26
License: GPL (>= 3)
Title: A Fast Parameter Estimation Method for Evolutionary Biology
Authors@R: c( person('Paul', 'Staab', , 'develop@paulstaab.de', role=c('aut',
    'cre', 'cph')), person('Lisha', 'Mathew', role=c('aut', 'cph')),
    person('Dirk', 'Metzler', role=c('aut', 'cph', 'ths')) )
BugReports: https://github.com/paulstaab/jaatha
Description: Jaatha is a composite likelihood method for inferring evolutionary
    parameters using genetic data. Given a model of the evolutionary history of
    two biological populations as well as SNP data from multiple individuals
    from each population, it estimates model parameters like the time of
    separation of both species.
URL: http://evol.bio.lmu.de/_statgen/software/jaatha
Depends: R (>= 3.0), methods
Imports: phyclust (>= 0.1-14), Rcpp (>= 0.11.0), reshape2 (>= 1.4),
        parallel
Suggests: ape (>= 2.7), testthat
LinkingTo: Rcpp
Collate: 'RcppExports.R' 'block.R' 'confidence_intervals.R'
        'sim_program.R' 'demographic_model.R'
        'estimate_log_likelihood.R' 'find_best_par_in_block.R'
        'fit_glm.R' 'helper_functions.R' 'initial_search.R' 'jaatha.R'
        'normalize.R' 'package_info.R' 'parallelization.R'
        'read_fasta.R' 'refined_search.R' 'run_simulations.R'
        'sim_likelihood.R' 'sim_program_ms.R' 'sim_program_msms.R'
        'sim_program_seqgen.R' 'simulate_within_block.R'
        'sum_stat_fpc.R' 'sum_stat_generate.R' 'sum_stat_jsfs.R'
        'sum_stat_pmc.R'
Packaged: 2014-11-26 12:20:14 UTC; paul
Author: Paul Staab [aut, cre, cph],
  Lisha Mathew [aut, cph],
  Dirk Metzler [aut, cph, ths]
Maintainer: Paul Staab <develop@paulstaab.de>
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-26 18:09:02
Built: R 3.1.2; x86_64-apple-darwin10.8.0; 2014-11-27 16:01:52 UTC; unix
Archs: jaatha.so.dSYM
