jaatha-package	jaatha-package
addFeature	addFeature
calcJsfs	calcJsfs
calculateJsfs	calculateJsfs
checkType	checkType
convertSimResultsToDataFrame	convertSimResultsToDataFrame
denormalize	denormalize
dm.addGrowth	dm.addGrowth
dm.addMigration	dm.addMigration
dm.addMutation	dm.addMutation
dm.addMutationRateHeterogenity	dm.addMutationRateHeterogenity
dm.addOutgroup	dm.addOutgroup
dm.addParameter	dm.addParameter
dm.addRecombination	dm.addRecombination
dm.addSampleSize	dm.addSampleSize
dm.addSizeChange	dm.addSizeChange
dm.addSpeciationEvent	dm.addSpeciationEvent
dm.addSummaryStatistic	dm.addSummaryStatistic
dm.addSymmetricMigration	dm.addSymmetricMigration
dm.createDemographicModel	dm.createDemographicModel
dm.createThetaTauModel	dm.createThetaTauModel
dm.getGroups	dm.getGroups
dm.getLociLength	dm.getLociLength
dm.getLociNumber	dm.getLociNumber
dm.setLociLength	dm.setLociLength
dm.setLociNumber	dm.setLociNumber
dm.setMutationModel	dm.setMutationModel
dm.simSumStats	dm.simSumStats
estimateLogLikelihood	estimateLogLikelihood
findBestParInBlock	findBestParInBlock
fitGlm	fitGlm
fitGlmPoiTransformed	fitGlmPoiTransformed
fitPoiSmoothed	fitPoiSmoothed
Jaatha-class	Jaatha-class
Jaatha.confidenceIntervals	Jaatha.confidenceIntervals
Jaatha.getCIsFromLogs	Jaatha.getCIsFromLogs
Jaatha.getLikelihoods	Jaatha.getLikelihoods
Jaatha.getStartingPoints	Jaatha.getStartingPoints
Jaatha.initialize	Jaatha.initialize
Jaatha.initialSearch	Jaatha.initialSearch
Jaatha.refinedSearch	Jaatha.refinedSearch
Jaatha.setSeqgenExecutable	Jaatha.setSeqgenExecutable
normalize	normalize
runSimulations	runSimulations
setCores	setCores
simulateWithinBlock	simulateWithinBlock
