calc.locallod           Calculate LOD score at physical position of
                        each gene
combinedist             Combine distance matrices into a single such
corbetw2mat             Calculate correlations between columns of two
                        matrices
distee                  Calculate distance between two gene expression
                        data sets
disteg                  Calculate distance between two gene expression
                        data sets
find.gene.pseudomarker
                        Find nearest peudomarker to each gene
findCommonID            Find individuals in common between a cross and
                        a phenotype matrix
fscale                  Standardize the columns of a matrix
lineupversion           Installed version of R/lineup
omitdiag                Replace the diagonal in a distance matrix with
                        missing values
plot.lineupdist         Plot summary of inter-individual distances
plot2dist               Plot two sets of inter-individual distances
                        against one another
plotEGclass             Plot classifier of eQTL genotype from
                        expression data
pulldiag                Pull out the diagonal from a distance matrix
subset.lineupdist       Subsetting distance matrix
summary.lineupdist      Summarize inter-individual distances
