micropan-package	micropan-package
bClust	bClust
bDist	bDist
binomixEstimate	binomixEstimate
binomixMachine	binomixMachine
blastAllAll	blastAllAll
branchPos	setLeafAttributes
chao	chao
clusterSignature	setLeafAttributes
dClust	dClust
distJaccard	distJaccard
distManhattan	distManhattan
entrezDownload	entrezDownload
fluidity	fluidity
geneWeights	geneWeights
getAccessions	getAccessions
gregexpr	gregexpr
heaps	heaps
hmmerCleanOverlap	hmmerCleanOverlap
hmmerScan	hmmerScan
isOrtholog	isOrtholog
micropan	micropan-package
Mpneumoniae	mpneumoniae
Mpneumoniae.blast.clustering	mpneumoniae
Mpneumoniae.blast.distances	mpneumoniae
Mpneumoniae.blast.panmat	mpneumoniae
Mpneumoniae.domain.clustering	mpneumoniae
Mpneumoniae.domain.panmat	mpneumoniae
Mpneumoniae.table	mpneumoniae
negTruncLogLike	negTruncLogLike
nonoverlap	hmmerCleanOverlap
objectFun	heaps
panColor	plot.Binomix
panMatrix	panMatrix
panpca	panpca
panPrep	panPrep
panTree	panTree
plot.Binomix	plot.Binomix
plot.Fasta	plot.Fasta
plot.Panmat	plot.Panmat
plot.Panpca	plot.Panpca
plot.Pantree	plot.Pantree
plot.Rarefac	plot.Rarefac
plotLoadings	plotScores
plotScores	plotScores
prodigalPredict	prodigalPredict
rarefaction	rarefaction
readBlastTable	readBlastTable
readFasta	readFasta
readHmmer	readHmmer
reverseComplement	reverseComplement
setLeafAttributes	setLeafAttributes
str.Binomix	plot.Binomix
str.Fasta	plot.Fasta
str.Panmat	plot.Panmat
str.Panpca	plot.Panpca
str.Pantree	plot.Pantree
str.Rarefac	plot.Rarefac
summary.Binomix	plot.Binomix
summary.Fasta	plot.Fasta
summary.Panmat	plot.Panmat
summary.Panpca	plot.Panpca
summary.Pantree	plot.Pantree
summary.Rarefac	plot.Rarefac
translate	translate
writeFasta	readFasta
xzcompress	xz
xzuncompress	xz
