Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

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Documentation for package ‘mvSLOUCH’ version 1.1.5

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mvSLOUCH-package Multivariate Ornstein-Uhlenbeck type stochastic differential equation models for phylogenetic comparative data.
BrownianMotionModel Estimate parameters under a Brownian motion model of evolution
fitch.mvsl Unordered Fitch parsimony reconstruction of discrete character states
mvSLOUCH Multivariate Ornstein-Uhlenbeck type stochastic differential equation models for phylogenetic comparative data.
mvslouchModel Estimate parameters under a (multivariate) OUBM model of evolution
ouchModel Estimate parameters under a (multivariate) OU model of evolution
simulBMProcPhylTree Simulate data on a phylogeny under a (multivariate) Brownian motion model
simulMVSLOUCHProcPhylTree Simulate data on a phylogeny under a (multivariate) OUBM model
simulOUCHProcPhylTree Simulate data on a phylogeny under a (multivariate) OU model
SummarizeBM Summarize parameters estimated under a Brownian motion model
SummarizeMVSLOUCH Summarize parameters estimated under a multivariate OUBM motion model
SummarizeOUCH Summarize parameters estimated under a (multivariate) OU motion model