FG90                    Pedigree, adapted from Table 1 in Fernando &
                        Grossman (1990)
Mrode2                  Pedigree from Table 2.1 of Mrode (2005)
Mrode9                  Pedigree, adapted from example 9.1 of Mrode
                        (2005)
aiCI                    Confidence Intervals for Variance Components
aiFun                   Sampling (co)variances
aic                     Akaike Information Criterion
constrainFun            Function used in conjunction with others to
                        produce a profile likelihood for a variance
                        component
drfx                    Simulated design random effects
findDFC                 Finds the double first cousins in a pedigree
genAssign               Generation assignment
ggcontrib               Genetic group contribution
grfx                    Simulated genetic random effects
makeA                   Creates the additive genetic relationship
                        matrix
makeAA                  Creates the additive by additive epistatic
                        genetic relationship matrix
makeAinv                Creates the Inverse additive genetic
                        relationship matrix
makeD                   Creates the dominance genetic realationship
                        matrix
makeDomEpi              Creates the additive by dominance and dominance
                        by dominance epistatic genetic relationship
                        matrices
makeDsim                Creates the dominance genetic relationship
                        matrix through an iterative (simulation)
                        process
makeS                   Creates the additive genetic relationship
                        matrix for the shared sex chromosomes
nadiv-package           Functions to construct (non)additive genetic
                        relatedness matrices and facilitate animal
                        model analyses
numPed                  Creates an integer format for a pedigree
parConstrainFun         Function used in the 'proLik' function to
                        produce a profile likelihood for a variance
                        component
pcc                     REML convergence checks
pin                     Approximate standard errors for linear
                        functions of variance components
plot.proLik             Plot profile Likelihood
prepPed                 Prepares a pedigree by sorting and adding
                        'founders'
proLik                  Estimates the profile likelihood of a random
                        effect
prunePed                Prunes a pedigree based on individuals with
                        phenotypes
simPedDFC               Double first cousin pedigree construction
simPedHS                Half-sib pedigree construction
sm2list                 Converts a sparse matrix into a three column
                        format.
varTrans                Transforms ASReml-R gamma variances to
                        component scale
warcolak                Pedigree and phenotypic values for a mythical
                        population of Warcolaks
