fakeOutbreak            Toy outbreak dataset used to illustrate
                        outbreaker
get.R                   Derive reproduction numbers from outbreak's
                        outputs
get.mu                  Derive mutation rate estimation from outbreak's
                        outputs
outbreaker              Outbreaker: disease outbreak reconstruction
                        using genetic data
plotChains              Plot outbreaker's results
selectChains            Select 'good' runs from independent MCMC chains
simOutbreak             Simulation of pathogen genotypes during disease
                        outbreaks
tTree                   Simple transmission tree from outreaber's
                        output
