as.igraph.simOutbreak	simOutbreak
as.igraph.tTree	tTree
disperse	simOutbreak
fakeOutbreak	fakeOutbreak
findMutations.tTree	tTree
get.incid	Rstat
get.mu	getMu
get.R	Rstat
get.Rt	Rstat
get.tTree	tTree
labels.simOutbreak	simOutbreak
outbreaker	outbreaker
outbreaker.parallel	outbreaker
plot.simOutbreak	simOutbreak
plot.tTree	tTree
plotChains	mainplots
plotOutbreak	mainplots
print.simOutbreak	simOutbreak
selectChains	selectChains
simOutbreak	simOutbreak
simOutbreak-class	simOutbreak
transGraph	mainplots
tTree	tTree
[.simOutbreak	simOutbreak
