EssGraph-class          Class '"EssGraph"'
GaussL0penIntScore-class
                        Class '"GaussL0penIntScore"'
GaussL0penObsScore-class
                        Class '"GaussL0penObsScore"'
GaussParDAG-class       Class '"GaussParDAG"'
LINGAM                  Linear non-Gaussian Additive Models
ParDAG-class            Class '"ParDAG"'
Score-class             Virtual Class "Score"
backdoor                Find Set Satisfying the Generalized Backdoor
                        Criterion
beta.special            Compute set of intervention effects
beta.special.pcObj      Compute set of intervention effects in a fast
                        way
binCItest               G square Test for (Conditional) Independence of
                        Binary Variables
checkTriple             Check Consistency of Conditional Independence
                        for a Triple of Nodes
compareGraphs           Compare two graphs in terms of TPR, FPR and TDR
condIndFisherZ          Test Conditional Independence of Gaussians via
                        Fisher's Z
corGraph                Computing the correlation graph
dag2cpdag               Convert a DAG to a CPDAG
dag2essgraph            Convert a DAG to an Essential Graph
dag2pag                 Convert a DAG with latent variables into a PAG
disCItest               G square Test for (conditional) Independence
                        for Discrete Data
dreach                  Compute D-SEP(x,y,G)
dsep                    Test for d-separation in a DAG
dsepTest                Test for d-separation in a DAG
fci                     Estimate a PAG, using the FCI-algorithm
fciAlgo-class           Class "fciAlgo"
fciPlus                 Estimate a PAG, using the FCI+ algorithm
find.unsh.triple        Find all Unshielded Triples in an Undirected
                        Graph
gAlgo-class             Class '"gAlgo"'
gds                     Greedy DAG Search to Estimate Markov
                        Equivalence Class of DAG
ges                     Estimate the Markov equivalence class of a DAG
                        using GES
getGraph                Get the "graph" Part or Aspect of R Object
getNextSet              Iteration through a list of all combinations of
                        choose(n,k)
gies                    Estimate Interventional Markov Equivalence
                        Class of a DAG by GIES
gmB                     Graphical Model 5-Dim Binary Example Data
gmD                     Graphical Model Discrete 5-Dim Example Data
gmG                     Graphical Model 8-Dimensional Gaussian Example
                        Data
gmI                     Graphical Model 7-dim IDA Data Examples
gmInt                   Graphical Model 8-Dimensional Interventional
                        Gaussian Example Data
gmL                     Latent Variable 4-Dim Graphical Model Data
                        Example
ida                     Estimate Multiset of Possible Total Causal
                        Effects
idaFast                 Multiset of Possible Total Causal Effects for
                        Several Target Var.s
iplotPC                 Plotting a pcAlgo object using the package
                        igraph
jointIda                Estimate Multiset of Possible Total Joint
                        Effects
legal.path              Check if a 3-node-path is Legal
mat2targets             Construct a list of intervention targets and a
                        target index vector
mcor                    Compute (Large) Correlation Matrix
pag2magAM               Transform a PAG into a MAG in the Corresponding
                        Markov Equivalence Class
pc                      Estimate the Equivalence Class of a DAG using
                        the PC Algorithm
pc.cons.intern          Utility for conservative and majority rule in
                        PC and FCI
pcAlgo                  PC-Algorithm [OLD]: Estimate Skeleton or
                        Equivalence Class of a DAG
pcAlgo-class            Class "pcAlgo"
pcSelect                PC-Select: Estimate subgraph around a response
                        variable
pcSelect.presel         Estimate Subgraph around a Response Variable
                        using Preselection
pcorOrder               Compute Partial Correlations
pdag2dag                Extend a Partially Directed Acyclic Graph
                        (PDAG) to a DAG
pdsep                   Estimate Final Skeleton in the FCI algorithm
plotAG                  Plot partial ancestral graphs (PAG)
plotSG                  Plot the subgraph around a Specific Node in a
                        Graph Object
possibleDe              Find possible descendants on definite status
                        paths.
qreach                  Compute Possible-D-SEP(x,G) of a node x in a
                        PDAG G
r.gauss.pardag          Generate a Gaussian Causal Model Randomly
randDAG                 Random DAG Generation
randomDAG               Generate a Directed Acyclic Graph (DAG)
                        randomly
rfci                    Estimate an RFCI-PAG using the RFCI Algorithm
rmvDAG                  Generate Multivariate Data according to a DAG
rmvnorm.ivent           Simulate from a Gaussian Causal Model
shd                     Compute Structural Hamming Distance (SHD)
showAmat                Show Adjacency Matrix of pcAlgo object
showEdgeList            Show Edge List of pcAlgo object
simy                    Estimate Interventional Markov Equivalence
                        Class of a DAG
skeleton                Estimate (Initial) Skeleton of a DAG using the
                        PC / PC-Stable Algorithm
trueCov                 Covariance matrix of a DAG.
udag2apag               Last step of RFCI algorithm: Transform
                        partially oriented graph into RFCI-PAG
udag2pag                Last steps of FCI algorithm: Transform Final
                        Skeleton into FCI-PAG
udag2pdag               Last PC Algorithm Step: Extend Object with
                        Skeleton to Completed PDAG
unifDAG                 Sample DAG uniformly
visibleEdge             Check visible edge.
wgtMatrix               Compute weight matrix of simulated DAG.
