pegas-package	pegas-package
alleles2loci	alleles2loci
amova	amova
as.igraph.haploNet	haploNet
as.loci	conversion
as.loci.character	conversion
as.loci.data.frame	conversion
as.loci.factor	conversion
as.loci.genind	conversion
as.network.haploNet	haploNet
bind.loci	bind.loci
cbind.loci	bind.loci
diffHaplo	diffHaplo
dist.haplotype.loci	haplotype.loci
edit.loci	edit.loci
expand.genotype	utilities
Fst	Fst
genind2loci	conversion
geod	geod
geoTrans	geoTrans
getAlleles	utilities
getGenotypes	utilities
getINFO	VCFloci
getPloidy	utilities
H	heterozygosity
haploFreq	haploFreq
haploNet	haploNet
haplotype	haplotype
haplotype.DNAbin	haplotype
haplotype.loci	haplotype.loci
heterozygosity	heterozygosity
hw.test	hw.test
hw.test.genind	hw.test
hw.test.loci	hw.test
is.phased	utilities
is.snp	utilities
is.snp.VCFinfo	VCFloci
jaguar	jaguar
LD	LD
LD2	LD
loci	read.loci
loci2genind	conversion
MMD	MMD
mst	mst
nuc.div	nuc.div
pegas	pegas-package
plot.haploNet	haploNet
plot.haplotype	haplotype
plot.haplotype.loci	haplotype.loci
plot.spectrum	site.spectrum
plot.summary.loci	summary.loci
print.amova	amova
print.haplotype	haplotype
print.loci	summary.loci
print.summary.loci	summary.loci
print.VCFinfo	VCFloci
proba.genotype	utilities
R2.test	R2.test
rangePOS	VCFloci
rbind.loci	bind.loci
read.gtx	read.gtx
read.loci	read.loci
read.vcf	read.vcf
replot	replot
rr.test	rr.test
selectQUAL	VCFloci
site.spectrum	site.spectrum
sort.haplotype	haplotype
subset.haplotype	subset.haplotype
summary.loci	summary.loci
tajima.test	tajima.test
theta.h	theta.h
theta.k	theta.k
theta.msat	theta.msat
theta.s	theta.s
theta.tree	theta.tree
VCFheader	VCFloci
VCFlabels	VCFloci
VCFloci	VCFloci
write.loci	write.loci
[.haplotype	haplotype
[.loci	summary.loci
