ConDivSim               Null models for functional-phylogenetic
                        diversity
cc.manip                Manipulating and examining comparative.comm
                        objects
comparative.comm        Creates a community comparative ecology object,
                        the basis of all functions in pez
dispersion              Calculate (phylogenetic) dispersion: examine
                        assemblages in the context of a source pools
dissimilarity           Calculate (phylogenetic) dissimilarity: compare
                        assemblages to one-another
dist.xxx                Make co-existence matrices based on phylogeny
                        (and/or) traits, and community or environemntal
                        overlap
drop_tip                Trim a phylogeny
eco.xxx.regression      eco.xxx.regression
eco.xxx.regression.list
                        List of eco.xxx.regressions
evenness                Calculate (phylogenetic) evenness: examine
                        assemblage composition and abundance
fingerprint.regression
                        Regress trait evolution against trait ecology
                        (following Cavender-Bares et al. 2004)
laja                    Macroinvertebrate samples from the Rio Laja of
                        Mexico
pez                     Phylogenetics for the Environmental Sciences
pglmm                   Phylogenetic Generalised Linear Mixed Model for
                        Community Data
phy.build               Build a novel phylogeny from existing data
                        (based on phyloGenerator)
phy.signal              Calculate phylogenetic 'signal'
plot.comparative.comm   Dot-plots of community presence/absence or
                        abundance
scape                   Simulate phylogenetic community structure
                        across a landscape
shape                   Calculate (phylogenetic) shape: examine
                        assemblage composition
sim.meta                Simulate a meta-community (and its phylogeny)
sim.phy                 Simulate phylogenies
trait.asm               Produces simulated communities based on species
                        attributes
traitgram.cc            Traitgram for comparative community object
