# Generated by roxygen2 (4.0.1): do not edit by hand

S3method("[",comparative.comm)
S3method(coef,phy.structure)
S3method(comm.dist,comparative.comm)
S3method(comm.dist,matrix)
S3method(funct.phylo.dist,comparative.comm)
S3method(phylo.dist,comparative.comm)
S3method(phylo.dist,phylo)
S3method(pianka.dist,comparative.comm)
S3method(pianka.dist,matrix)
S3method(plot,communityPGLMM)
S3method(plot,comparative.comm)
S3method(plot,eco.xxx.regression)
S3method(plot,eco.xxx.regression.list)
S3method(plot,fingerprint.regression)
S3method(print,comparative.comm)
S3method(print,eco.xxx.regression)
S3method(print,eco.xxx.regression.list)
S3method(print,fingerprint.regression)
S3method(summary,communityPGLMM)
S3method(summary,eco.xxx.regression)
S3method(summary,eco.xxx.regression.list)
S3method(summary,fingerprint.regression)
S3method(summary,phy.structure)
S3method(traits.dist,comparative.comm)
S3method(traits.dist,data.frame)
S3method(traits.dist,default)
S3method(within,comparative.comm)
export("comm<-")
export("env<-")
export("phy<-")
export("sites<-")
export("species<-")
export("traits<-")
export("tree<-")
export(ConDivSim)
export(assemblage.phylogenies)
export(bind.replace)
export(comm)
export(comm.dist)
export(communityPGLMM)
export(communityPGLMM.binary)
export(communityPGLMM.binary.LRT)
export(communityPGLMM.gaussian)
export(communityPGLMM.matrix.structure)
export(communityPGLMM.predicted.values)
export(comparative.comm)
export(congeneric.merge)
export(dispersion)
export(dissimilarity)
export(dist.func.default)
export(drop_tip)
export(eco.env.regression)
export(eco.phy.regression)
export(eco.trait.regression)
export(edge2phylo)
export(env)
export(env.names)
export(evenness)
export(fingerprint.regression)
export(funct.phylo.dist)
export(phy)
export(phy.signal)
export(phylo.dist)
export(pianka.dist)
export(princompOne)
export(print.phy.structure)
export(scape)
export(shape)
export(sim.bd.phy)
export(sim.bd.tr.phy)
export(sim.meta.comm)
export(sim.meta.phy.comm)
export(sites)
export(species)
export(trait.names)
export(traitgram.cc)
export(traits)
export(traits.dist)
export(tree)
importClassesFrom(Matrix,RsparseMatrix)
importClassesFrom(Matrix,dsCMatrix)
importFrom(FD,dbFD)
importFrom(ade4,newick2phylog)
importFrom(ade4,scalewt)
importFrom(apTreeshape,as.treeshape)
importFrom(apTreeshape,as.treeshape.phylo)
importFrom(apTreeshape,colless)
importFrom(apTreeshape,tipsubtree)
importFrom(ape,as.phylo)
importFrom(ape,as.phylo.formula)
importFrom(ape,bind.tree)
importFrom(ape,compute.brlen)
importFrom(ape,cophenetic.phylo)
importFrom(ape,corBlomberg)
importFrom(ape,drop.tip)
importFrom(ape,extract.clade)
importFrom(ape,gammaStat)
importFrom(ape,is.rooted)
importFrom(ape,is.ultrametric)
importFrom(ape,multi2di)
importFrom(ape,plot.phylo)
importFrom(ape,tiplabels)
importFrom(ape,vcv)
importFrom(ape,vcv.phylo)
importFrom(ape,write.tree)
importFrom(caper,VCV.array)
importFrom(caper,clade.matrix)
importFrom(caper,coef.pgls)
importFrom(caper,comparative.data)
importFrom(caper,contrCalc)
importFrom(caper,pgls)
importFrom(caper,phylo.d)
importFrom(caper,summary.pgls)
importFrom(mvtnorm,rmvnorm)
importFrom(picante,Kcalc)
importFrom(picante,comdist)
importFrom(picante,evol.distinct)
importFrom(picante,mntd)
importFrom(picante,mpd)
importFrom(picante,pcd)
importFrom(picante,pd)
importFrom(picante,phylosor)
importFrom(picante,psd)
importFrom(picante,pse)
importFrom(picante,randomizeMatrix)
importFrom(picante,raoD)
importFrom(picante,ses.mntd)
importFrom(picante,ses.mpd)
importFrom(picante,ses.pd)
importFrom(picante,traitgram)
importFrom(picante,unifrac)
importFrom(plotrix,color2D.matplot)
importFrom(quantreg,print.rq)
importFrom(quantreg,rq)
importFrom(quantreg,summary.rq)
importFrom(vegan,mantel)
importFrom(vegan,taxondive)
importMethodsFrom(Matrix,"%*%")
importMethodsFrom(Matrix,determinant)
importMethodsFrom(Matrix,diag)
importMethodsFrom(Matrix,solve)
importMethodsFrom(Matrix,t)
