phylotools-package	phylotools-package
add.mat	add.mat
aln2dat	aln2dat
appendchar	appendchar
complement	complement
dat2phy	dat2phy
del.tree.tip	del.tree.tip
dimension	dimension
edgesub	edgesub
fasta.split	fasta.split
fmatch	fmatch
formatXY	formatXY
framsub	framsub
gini	gini
hcreorder	hcreorder
imagevect	imagevect
inequality	inequality
meangini	meangini
phy2dat	phy2dat
phylocom.comdist	phylocom.comdist
phylocom.comstruct	phylocom.comstruct
phylocom.pd	phylocom.pd
phylocom.phylosor	phylocom.phylosor
phyloshuffle	phyloshuffle
phylotools	phylotools-package
plotcut	plotcut
plotscale	plotscale
read.phylip	read.phy
rename.fasta	rename.fasta
resid.tree	resid.tree
reverse	reverse
rh	rh
rm.col	rm.col
RMPD	RMPD
seq2fasta	seq2fasta
sub.tip.label	sub.tip.label
supermat	supermat
uniquefasta	uniquefasta
write.mat	write.mat
