Aeut                    Oomycete root rot pathogen _Aphanomyces
                        euteiches_ AFLP data
Pinf                    Phytophthora infestans data from Mexico and
                        South America.
aboot                   Calculate a dendrogram with bootstrap support
                        using any distance applicable to genind or
                        genclone objects.
as.genclone             Create a genclone object from a genind object.
bruvo.boot              Create a tree using Bruvo's Distance with
                        non-parametric bootstrapping.
bruvo.dist              Bruvo's distance for microsatellites
bruvo.msn               Create minimum spanning network of selected
                        populations using Bruvo's distance.
clonecorrect            Remove potential bias caused by cloned
                        genotypes in genind or genclone object.
diss.dist               Calculate a distance matrix based on relative
                        dissimilarity
genclone-class          Genclone class
genind2genalex          Exporting data from genind objects to genalex
                        formatted *.csv files.
genotype_curve          Produce a genotype accumulation curve
getfile                 Get a file name and path and store them in a
                        list.
gethierarchy            Access and manipulate the population hierarchy
                        for genclone objects.
greycurve               Display a greyscale gradient adjusted to
                        specific parameters
ia                      Index of Association
info_table              Create a table summarizing missing data or
                        ploidy information of a genind or genclone
                        object
informloci              Remove all non-phylogentically informative loci
is.genclone             Check for validity of a genclone object
locus_table             Create a table of summary statistics per locus.
missingno               How to deal with missing data in a genind
                        object.
mlg                     Create counts, vectors, and matrices of
                        multilocus genotypes.
monpop                  Peach brown rot pathogen _Monilinia fructicola_
nei.dist                Calculate Genetic Distance for a genind or
                        genclone object.
partial_clone           Simulated data illustrating a Minimum Spanning
                        Network based on Bruvo's Distance
plot_poppr_msn          Plot minimum spanning networks produced in
                        poppr.
poppr                   Produce a basic summary table for population
                        genetic analyses.
poppr-package           The 'poppr' R package.
poppr.all               Process a list of files with poppr
poppr.amova             Perform Analysis of Molecular Variance (AMOVA)
                        on genind or genclone objects.
poppr.msn               Create a minimum spanning network of selected
                        populations using a distance matrix.
popsub                  Subset a 'genclone' or 'genind' object by
                        population
private_alleles         Tabulate alleles the occur in only one
                        population.
read.genalex            Importing data from genalex formatted *.csv
                        files.
recode_polyploids       Recode polyploid microsatellite data for use in
                        frequency based statistics.
setpop                  Manipulate the population factor of genclone
                        objects.
shufflepop              Shuffle individuals in a 'genclone' or 'genind'
                        object independently over each locus.
splitcombine            Split a or combine items within a data frame in
                        'genind' objects (DEPRECATED).
