AA	AA
aa2mass	aa2mass
apex	fetuinLFQ
averagine	averagine
bymatrix	fragmentIons
defaultIon	fragmentIons
deisotoper	deisotoper
de_novo	de_novo
empai	fetuinLFQ
fetuinLFQ	fetuinLFQ
findNN	findNN
findNN_	findNN_
fragmentIon	fragmentIons
genMod	genMod
HexNAc	HexNAc
ionseries	fragmentIons
iRT	iRTpeptides
irt	iRTpeptides
iRTpeptides	iRTpeptides
iTRAQ	iTRAQ
iTRAQ2GroupAnalysis	iTRAQ2GroupAnalysis
lcmsmap	lcmsmap
lcmsoverview	lcmsmap
massDeviationPlot	mdp
mdp	mdp
msms	msms
NN	findNN
NN_	findNN_
parentIonMass	parentIonMass
peakplot	peakplot
peakplot.label	peakplot
peakplot.pie	peakplot
peakplot.putlabel	peakplot
pep3d	lcmsmap
pepmass	parentIonMass
peptidespectrummatching	psm
pgImporter	pgImporter
pgLFQaov	pgLFQaov
pgLFQfeature	pgLFQfeature
pgLFQprot	pgLFQprot
pgLFQtNpq	pgLFQtNpq
pim	parentIonMass
ppp	ppp
pps	pps
pPTM	PTM_MarkerFinder
pressureProfile	pressureProfile
pressureProfilePlot	ppp
pressureProfileSummary	pps
psm	psm
PTM_MarkerFinder	PTM_MarkerFinder
PTM_MarkerFinder_util	PTM_MarkerFinder_util
sigmamix	sigmamix
t3pq	fetuinLFQ
tNpq	pgLFQtNpq
