Qagr_adult_genotypes    Coast live oak (Quercus agrifolia) adult
                        microsatellite genotypes
Qagr_pericarp_genotypes
                        Coast live oak (Quercus agrifolia) pericarp
                        microsatellite genotypes
addLocus                Add genotype data to an object of class
                        "genalex"
as.data.frame.genalex   Convert class "genalex" to data frame
as.genalex              Convert object to class 'genalex'
as.genetics             Convert class "genalex" object to data frame
                        encoding loci using classes from package
                        "genetics"
as.loci.genalex         Convert class "genalex" object to data frame of
                        class "loci" from package "pegas"
cbind.genalex           Combine loci from class "genalex" data sets
checkNullAlleles        Check for potential null (non-amplifying)
                        alleles
dropLocus               Remove specified loci from data frame of class
                        "genalex"
extra                   Return or set the extra data columns of an
                        object of class "genalex"
genalex                 Create new object of class "genalex" from
                        constituent data
getLocus                Return genotype data for specified loci
getLocusColumns         Determine numeric column positions occupied by
                        named loci
getPopulation           Return genotypes for specified populations
is.genalex              Check to see if an object is of class 'genalex'
joinGenotypes           Join genotypes encoded as separate alleles into
                        single genotypes like class "genotype" or class
                        "loci"
ploidy                  Return ploidy for object of class "genalex"
printGenotype           Print selected genotypes
rbind.genalex           Combine class "genalex" data sets by adding
                        rows
readGenalex             Read GenAlEx-format genotypes file
readGenalex-deprecated
                        Deprecated functions in the 'readGenalex'
                        package
readGenalex-package     Read, manipulate, write and convert
                        GenAlEx-format genotype data
readGenalexExcel        Read GenAlEx-format genotypes from an Excel
                        worksheet
reducePloidy            Reduce the ploidy of an object of class
                        "genalex"
reorderLoci             Reorder class "genalex" genotype columns
replaceLocus            Replace genotype data in data frame of class
                        "genalex"
splitGenotypes          Split genotypes encoded like class 'genotype'
                        into separate alleles
summary.genalex         Summarise contents of class 'genalex' data
                        frame
writeGenalex            Write GenAlEx-format genotypes to a text file
writeGenalexExcel       Write GenAlEx-format genotypes to an Excel
                        worksheet
writeGenepop            Write GenAlEx-format genotypes to a text file
                        in Genepop format
