DESeqWrapper            A wrapper for DESeq
calcBasicDE             Calculate basics differential expression
                        between pairs of columns
calcCombVals            Calculate group values from RNAseq data
calcHornMatrix          Calculate a Horn distance matrix
calcLogVal              Calculate log value of RNAseq columns
calculateThirdPosBias   Calculate the third position bias of
                        polymorphisms
determineSynonymous     Determine whether or not variants are
                        synonomous
female_1.genes.results
                        Expression data for use in examples for the
                        rnaseqWrapper package
heatmap.mark            Enhanced Heat Map, further modified
kaksFromVariants        Calculate Ka/Ks ratios from a table of variants
mergeCountFiles         Merge multiple expression count data files for
                        RNAseq
nSynNonSites            Calculate the number of (non) synonomous sites
parseVarScan            Parse a VarScan output
readVariantFiles        Read in variant files for RNAseq
rnaseqWrapper-package   A Wrapper for RNAseq analysis
runGOAnalysis           Run basic GO analysis
varScanExample          Data for use in examples for the rnaseqWrapper
                        package
