rnaseqWrapper-package	rnaseqWrapper-package
calcBasicDE	calcBasicDE
calcCombVals	calcCombVals
calcHornMatrix	calcHornMatrix
calcLogVal	calcLogVal
calculateThirdPosBias	calculateThirdPosBias
DESeqWrapper	DESeqWrapper
determineSynonymous	determineSynonymous
fastaExample	dataFile
female_1.genes.results	countData
female_2.genes.results	countData
female_3.genes.results	countData
heatmap.mark	heatmap.mark
kaksFromVariants	kaksFromVariants
male_1.genes.results	countData
male_2.genes.results	countData
male_3.genes.results	countData
mergeCountFiles	mergeCountFiles
nSynNonSites	nSynNonSites
parseVarScan	parseVarScan
plotDE	DESeqWrapper
plotDispEsts	DESeqWrapper
readVariantFiles	readVariantFiles
rnaseqWrapper	rnaseqWrapper-package
runGOAnalysis	runGOAnalysis
varScanExample	dataFile
