PD1.saemix              Data simulated according to an Emax response
                        model, in SAEM format
SaemixData-class        Class "SaemixData"
SaemixModel-class       Class "SaemixModel"
SaemixObject-class      Class "SaemixObject"
[-methods               Methods for "get" Function [
[<--methods             Methods for "set" Function [<-
coef-methods            Methods for Function coef
conddist.saemix         Estimate conditional mean and variance of
                        individual parameters using the MCMC algorithm
cow.saemix              Evolution of the weight of 560 cows, in SAEM
                        format
default.saemix.plots    Wrapper functions to produce certain sets of
                        default plots
fim.saemix              Computes the Fisher Information Matrix by
                        linearisation
initialize-methods      Methods for Function initialize
llgq.saemix             Log-likelihood using Gaussian Quadrature
llis.saemix             Log-likelihood using Importance Sampling
logLik-methods          ~~ Methods for Function 'logLik' ~~
map.saemix              Estimates of the individual parameters
                        (conditional mode)
oxboys.saemix           Heights of Boys in Oxford
plot-methods            Methods for Function plot
plot.saemix             General plot function from SAEM
predict-methods         Methods for Function predict
print-methods           Methods for Function print
psi                     Functions to extract the individual estimates
                        of the parameters and random effects
psi-methods             Methods for Functions psi, phi and eta
saemix                  Stochastic Approximation Expectation
                        Maximization (SAEM) algorithm
saemix-package          Stochastic Approximation Expectation
                        Maximization (SAEM) algorithm for non-linear
                        mixed effects models
saemix.plot.data        Functions implementing each type of plot in
                        SAEM
saemix.plot.select      Plots of the results obtained by SAEM
saemix.plot.setoptions
                        Function setting the default options for the
                        plots in SAEM
saemixControl           List of options for running the algorithm SAEM
saemixData              Function to create a SaemixData object
saemixModel             Function to create a SaemixModel object
show-methods            Methods for Function show
showall                 Prints out an extensive summary of an object
showall-methods         Methods for Function showall
simul.saemix            Perform simulations under the model
subset-methods          Methods for subset
summary-methods         Methods for Function summary
testnpde                Tests for normalised prediction distribution
                        errors
theo.saemix             Pharmacokinetics of theophylline, in SAEM
                        format
yield.saemix            Wheat yield in crops treated with fertiliser,
                        in SAEM format
