ConvFas                 Convert files to fasta format
as.fasta                Coerce "phy" or "nex" objects to fasta format.
clipprobe               Finding the sequences that could be clipped
                        given two primers.
dataframe2fas           Convert dataframe to fasta format
enzCut                  Restriction enzyme cutting pattern
enzdata                 The restriction enzyme datasets.
fil.fas                 Fasta data example.
fil.nxs                 Internal nexus data.
fil.phy                 Internal phylip format data
file.cat                Copy or concatenate files to one.
findprobe               Find probes matching sites
frag.dat                Reports for simulated RFLP cutting pattern
gnames.fas              Get the names of sequences from fasta objects.
plotenz                 Plotting the simulated RFLP or TRFLP pattern
raw2Fas                 Read and converting raw DNA files to fasta
                        format.
read.fasta              Read fasta file
read.nxs                Read nexus file
read.phy                Read phylip file
rename.fas              Change the sequence names of fasta objects.
revComp                 Reverse complement sequence
selEnz                  Selecting restriction enzyme
seqRFLP-package         Simulation and visualization of Restriction
                        Fragment Length Polymorphism(RFLP) pattern from
                        DNA sequences
write.fasta             Write fasta format object to file
