aaaggregation           Scheme for amino acid aggregation
benchmark_dat           Benchmark data set for signal.hsmm
duration_viterbi        Compute most probable path with extended
                        Viterbi algorithm
find_nhc                Localize n-, h- and c-region in signal peptide
gui_signal.hsmm         GUI for signal.hsmm
hsmm_pred               hsmm_pred class
hsmm_pred_list          hsmm_pred_list class
is_protein              Protein test
plot.hsmm_pred          Plot single signal.hsmm prediction
pred2df                 Convert list of signal.hsmm predictions
predict.sighsmm_model   Predict sighsmm_model object
read_txt                Read sequences from .txt file
read_uniprot            Read data from UniProt database
run_signal.hsmm         Predict presence of signal peptide in protein
signal.hsmm             signal.hsmm - prediction of signal peptides
summary.hsmm_pred       Summarize single signal.hsmm prediction
summary.hsmm_pred_list
                        Summarize list of signal.hsmm predictions
train_hsmm              Train sighsmm_model object
