Package: ssizeRNA
Type: Package
Title: Sample Size Calculation for RNA-Seq Experimental Design
Version: 1.1.2
Date: 2015-04-30
Author: Ran Bi <biran@iastate.edu>, Peng Liu <pliu@iastate.edu>
Maintainer: Ran Bi <biran@iastate.edu>
Description: We propose a procedure for sample size calculation while controlling false discovery rate for RNA-seq experimental design. Our procedure depends on the Voom method proposed for RNA-seq data analysis by Law et al. (2014) and the sample size calculation method proposed for microarray experiments by Liu and Hwang (2007). We develop a set of functions that calculates appropriate sample sizes for two-sample t-test for RNA-seq experiments with fixed or varied set of parameters. The outputs also contain a plot of power versus sample size, a table of power at different sample sizes, and a table of critical test values at different sample sizes. To install this package, please use "source('http://bioconductor.org/biocLite.R'); biocLite('ssizeRNA', type = 'source')".
Depends: R (>= 3.1.2)
Imports: MASS, Biobase, edgeR, limma, qvalue, ssize.fdr
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-05-11 23:25:35 UTC; Ran
Repository: CRAN
Date/Publication: 2015-05-12 08:01:42
Built: R 3.1.3; ; 2015-05-13 10:12:43 UTC; unix
