# Generated by roxygen2 (4.1.0): do not edit by hand

export(align.clustal)
export(align.folder)
export(align.mafft)
export(allele.freq.format)
export(allele.freqs)
export(allele.split)
export(allelic.richness)
export(as.data.frame.gtypes)
export(as.dna.seq)
export(as.matrix.gtypes)
export(base.freqs)
export(check.genotypes)
export(check.gtypes)
export(check.seqs)
export(clumpp.run)
export(create.consensus)
export(decode)
export(decode.loci)
export(decode.sequences)
export(decode.strata)
export(diversity)
export(dup.genotypes)
export(exptd.het)
export(fastsimcoal.run)
export(fastsimcoal.write)
export(fisher.method.p)
export(fixed.differences)
export(fixed.sites)
export(fst.to.nm)
export(gelato.plot)
export(gelato.run)
export(gen.data.from.freq)
export(genepop.run)
export(genepop.write)
export(gtypes)
export(gtypes.character)
export(gtypes.default)
export(gtypes.list)
export(h.stats)
export(hap.freqs)
export(haplotype.likelihoods)
export(haplotypic.diversity)
export(hwe.genepop)
export(is.aligned.seq)
export(is.diploid)
export(is.dna.seq)
export(is.gtypes)
export(is.haploid)
export(is.ti.tv)
export(iupac.code)
export(jack.hwe)
export(jack.influential)
export(jmodeltest.run)
export(label.haplotypes)
export(label.haplotypes.default)
export(label.haplotypes.gtypes)
export(linkage.genepop)
export(locus.cols)
export(locus.names)
export(low.freq.subs)
export(merge.gtypes)
export(most.distant.sequences)
export(na.omit.gtypes)
export(nei.Da)
export(nucleotide.divergence)
export(nucleotide.diversity)
export(num.alleles)
export(num.alleles.shared)
export(num.gens.eq)
export(num.loci)
export(num.missing)
export(obsvd.het)
export(overall.test)
export(p.val)
export(pairwise.shared.loci)
export(pairwise.test)
export(pct.unique.haplotypes)
export(phase.filter)
export(phase.posterior)
export(phase.read.pair)
export(phase.read.sample)
export(phase.run)
export(phase.write)
export(plot.jack.influential)
export(pop.diff.test)
export(print.gtypeSummary)
export(read.arlequin)
export(read.fasta)
export(read.gen.data)
export(read.mega)
export(relabel.sequences)
export(restratify)
export(sequence.summary)
export(shared.haps)
export(sim.gamma.haps)
export(smry.by.locus)
export(smry.by.sample)
export(stat.chi2)
export(stat.d.jost)
export(stat.fst)
export(stat.fst.prime)
export(stat.gst)
export(stat.gst.dbl.prime)
export(stat.gst.prime.hedrick)
export(stat.gst.prime.nei)
export(stat.phist)
export(stopifnot.aligned)
export(stopifnot.gtypes)
export(strata.pairs)
export(strata.split)
export(structure.evanno)
export(structure.plot)
export(structure.read)
export(structure.run)
export(structure.write)
export(subset.gtypes)
export(summarize.loci)
export(summarize.sequences)
export(summary.gtypes)
export(tajimas.d)
export(theta)
export(ti.tv.ratio)
export(trim.ns)
export(valid.iupac.codes)
export(variable.sites)
export(wright.fst)
export(write.arlequin)
export(write.fasta)
export(write.gtypes)
export(write.mega)
export(write.snapp.nexus)
importFrom(MASS,fitdistr)
importFrom(ape,as.DNAbin)
importFrom(ape,dist.dna)
importFrom(ape,read.dna)
importFrom(ape,read.nexus.data)
importFrom(ape,write.dna)
importFrom(ape,write.nexus.data)
importFrom(parallel,mclapply)
importFrom(pegas,theta.h)
importFrom(reshape2,dcast)
importFrom(swfscMisc,harmonic.mean)
importFrom(swfscMisc,odds)
importFrom(swfscMisc,one.arg)
importFrom(swfscMisc,zero.pad)
useDynLib(strataG)
