strataG-package	strataG-package
align.clustal	align.clustal
align.folder	align.folder
align.mafft	align.mafft
allele.freq.format	allele.freq.format
allele.freqs	allele.freqs
allele.split	allele.split
allelic.richness	allelic.richness
arlequin	read.arlequin
as.data.frame.gtypes	as.data.frame.gtypes
as.dna.seq	as.dna.seq
as.matrix.gtypes	as.matrix.gtypes
base.freqs	base.freqs
bowhead.snp.position	bowhead.snp.position
bowhead.snps	bowhead.snps
check.genotypes	check.genotypes
check.gtypes	gtypes
check.seqs	check.seqs
clumpp	clumpp.run
clumpp.run	clumpp.run
create.consensus	create.consensus
Da	nei.Da
decode	decode
decode.loci	decode
decode.sequences	decode
decode.strata	decode
diversity	diversity
dolph.haps	dolph.haps
dolph.msats	dolph.msats
dolph.seqs	dolph.seqs
dolph.strata	dolph.strata
dup.genotypes	dup.genotypes
exptd.het	exptd.het
fasta	read.fasta
fastsimcoal	fastsimcoal.run
fastsimcoal.run	fastsimcoal.run
fastsimcoal.write	fastsimcoal.run
fisher.method.p	fisher.method.p
fixed.differences	fixed.differences
fixed.sites	fixed.sites
fst.to.nm	fst.to.nm
gelato	gelato.run
gelato.plot	gelato.plot
gelato.run	gelato.run
gen.data.from.freq	gen.data.from.freq
genepop	genepop.run
genepop.run	genepop.run
genepop.write	genepop.run
gtype.struct.func	gtype.struct.func
gtype.struct.stat	gtype.struct.func
gtypes	gtypes
gtypes.character	gtypes
gtypes.default	gtypes
gtypes.list	gtypes
h.stats	h.stats
hap.freqs	hap.freqs
haplotype.likelihoods	haplotype.likelihoods
haplotypic.diversity	haplotypic.diversity
hwe	hwe.genepop
hwe.genepop	hwe.genepop
is.aligned.seq	as.dna.seq
is.diploid	is.diploid
is.dna.seq	as.dna.seq
is.gtype.struct.func	is.gtype.struct.func
is.gtypes	gtypes
is.haploid	is.diploid
is.ti.tv	ti.tv.ratio
iupac.code	iupac.code
jack.hwe	jack.hwe
jack.influential	jack.hwe
jmodeltest.run	jmodeltest.run
label.haplotypes	label.haplotypes
label.haplotypes.default	label.haplotypes
label.haplotypes.gtypes	label.haplotypes
linkage.genepop	linkage.genepop
locus.cols	locus.names
locus.names	locus.names
low.freq.subs	low.freq.subs
mega	read.mega
merge.gtypes	merge.gtypes
most.distant.sequences	most.distant.sequences
na.omit.gtypes	na.omit.gtypes
nei.Da	nei.Da
nucleotide.divergence	nucleotide.divergence
nucleotide.diversity	nucleotide.diversity
num.alleles	num.alleles
num.alleles.shared	num.alleles.shared
num.gens.eq	num.gens.eq
num.loci	locus.names
num.missing	num.missing
obsvd.het	obsvd.het
overall.test	pop.diff.test
p.val	p.val
pairwise.shared.loci	pairwise.shared.loci
pairwise.test	pop.diff.test
pct.unique.haplotypes	pct.unique.haplotypes
phase	phase.run
phase.filter	phase.run
phase.posterior	phase.run
phase.read.pair	phase.run
phase.read.sample	phase.run
phase.run	phase.run
phase.write	phase.run
plot.jack.influential	jack.hwe
pop.diff.test	pop.diff.test
print.gtypeSummary	print.gtypeSummary
read.arlequin	read.arlequin
read.fasta	read.fasta
read.gen.data	read.gen.data
read.mega	read.mega
relabel.sequences	relabel.sequences
restratify	restratify
sequence.summary	sequence.summary
shared.haps	shared.haps
sim.gamma.haps	sim.gamma.haps
smry.by.locus	smry.by.locus
smry.by.sample	smry.by.sample
stat.chi2	stat.chi2
stat.d.jost	stat.d.jost
stat.fst	stat.fst
stat.fst.prime	stat.fst.prime
stat.gst	stat.gst
stat.gst.dbl.prime	stat.gst.dbl.prime
stat.gst.prime.hedrick	stat.gst.prime.hedrick
stat.gst.prime.nei	stat.gst.prime.nei
stat.list	pop.diff.test
stat.phist	stat.phist
stopifnot.aligned	as.dna.seq
stopifnot.gtype.struct.func	stopifnot.gtype.struct.func
stopifnot.gtypes	gtypes
strata.pairs	strata.pairs
strata.split	strata.split
strataG	strataG-package
structure	structure.run
structure.evanno	structure.evanno
structure.parse.q.mat	structure.parse.q.mat
structure.plot	structure.plot
structure.read	structure.run
structure.run	structure.run
structure.write	structure.run
subset.gtypes	subset.gtypes
summarize.loci	summarize.loci
summarize.sequences	summarize.sequences
summary.gtypes	summary.gtypes
tajimas.d	tajimas.d
theta	theta
ti.tv.ratio	ti.tv.ratio
trim.ns	trim.ns
valid.iupac.codes	valid.iupac.codes
variable.sites	variable.sites
wright.fst	wright.fst
write.arlequin	read.arlequin
write.fasta	read.fasta
write.gtypes	write.gtypes
write.mega	read.mega
write.snapp.nexus	write.snapp.nexus
