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| BPEC-package | Bayesian Phylogeographic and Ecological Clustering (BPEC) |
| BPEC.ContourPlot | Plot contours of inferred clusters on geographical map |
| BPEC.CovariatesPlot | Plot posterior marginal distribution of each covariate for the inferred clusters |
| BPEC.GeoTree | Phylogeographic GoogleEarth plot |
| BPEC.MCMC | Markov chain Monte Carlo sampler for BPEC |
| BPEC.TreePlot | Treeplot indicating cluster membership |
| CladeBrownFrogsCoordsLocs | Coordinates and haplotypes for the Brown Frog dataset |
| CladeBrownFrogsRawSeqs | Sequences for the Brown Frog dataset |
| MacrocnemisCoordsLocs | Coordinates and haplotypes for the R.macrocnemis Brown Frog dataset |
| MacrocnemisRawSeqs | Sequences for the R.macrocnemis Brown Frog dataset |
| TransalpinaCoordsLocs | Coordinates and haplotypes for the burnet moth dataset. |
| TransalpinaRawSeqs | Sequences for the burnet moth dataset. |